BAC Information

Click to search

BAC

Clone NameMSMg01-072H06
ChromosomeX (Build37)
Map Location 164,388,041 - 164,388,257
singlet/doubletsinglet
Overlap geneFrmpd4
Upstream geneLOC667791, EG667794, LOC100040850, LOC627268, Tmsb4x, Tlr8, Tlr7, Prps2, EG627311
Downstream geneEG667822, EG637566, Msl31, Arhgap6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072H06.T7 (MSMg01no072_h06.b1)MSMg01-072H06.TJ (MSMg01no072_h06.g1)
ACCAG295993AG295994
length724719
length of high quality
(start - end)
222 (71 - 292)337 (75 - 411)
definitionCHROMAT_FILE: MSMg01no072_h06.b1 PHD_FILE: MSMg01no072_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:12 2005CHROMAT_FILE: MSMg01no072_h06.g1 PHD_FILE: MSMg01no072_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAAAATTTGCGGCGCTAAACGACTACTAATTCGAGAAGATCCGCGGAATT
CTCTTTATTCCCCGGTTGATCTGAAGCCAGCAGGTGCGCAGTTATTAGCT
TGTCTGCTACGGAGCACATAAAAACAAAACAAAACTAAACAAAACAAAAC
AAAACAAAACAAACAAACAAACAAAAAACCTGAGATCTGAACCATGATCC
AGGCTCCTCTCATCCCTATACCAATACTTTTTCAAATTAGTAATGACTAG
TCTCTAGAACTACAAAGACTTACCTGTATATCCAGTATTCTACTATGGGA
TGTACAATATCATTTTAAATGATATTCTGTATTAACTGTGGATACATGTT
TTCATCTCCACTACTGTGTTTATATTCTAGGGTTACCGACCATTATCTGT
TTTTAATGGTAATTGCCACTCTATTTCTGGTTCAATCTGACTTTATACTC
CCAAAATATTAAAACATTTACGGCTAAGAGAAATAGCGTTTATGAATAGT
CTGATCTCGTAAATATACTGACTATTTGTGGAATCTCTTTGAATCATCGC
AGACTAGTATCTGATGAAAAATACTGCTAATACAATATTGCTCCCTCTAT
AACCCGTCATATCTAGTTTATATATCCACTTAATTCACTTCCAATATGAT
CACCGATTCGCATATACTATTCCATAATTTGCGCGATTGGACTCCGGATA
TTTTATGTCTCTTGCTGATACAGG
NCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGA
GAAGCACCTGAAAAAATGCTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAGAT
CAGTCTGGCGGTTCCTCAGAAAACTGGATATAGTACTACCGGAGGATCCA
GCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAA
GGACACATGCTGCACTATGTTCATAGCAGTCTTATTTATAATAGCCAGAA
GCTGGAAGGAGCCCAGATGCCCCTCAACAGAGGAATGGAGACAGAAGACG
TGGGACTTCTACACAATGGAGTACTACTCAGCTATTAATAAGAATGAAGT
TATGAAATTCCTGGCCAAATGGATGGAGCTGTAGGGCGTCTTCCTGACTG
AGGTAACACATTCACAAAGGAACTCACTCAATACGTACTCTCTGATAAGC
GGGAATTATCCTCATACCTAAGATACTCAAGATTTAAGATACCCTTTCCA
AATCACTTGAAACTCAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_h06.b1 MSMg01no072_h06.b1 CHROMAT_FILE:
MSMg01no072_h06.b1 PHD_FILE: MSMg01no072_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:12 2005
         (222 letters)



>mm_chrX_164387748_164388369
          Length = 622

 Score =  398 bits (206), Expect = e-115
 Identities = 216/222 (97%), Gaps = 5/222 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgaagccagcaggtgcgcagttattagcttgtctgctacggagcacataaaaacaaaac 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ctgaagccagcaggtgtgcagttattagcttgtctgctacggagcacataaaaacaaaac 451

                                                                       
Query: 61  aaaactaaacaaaacaaaacaaaacaaaacaaacaaacaaacaaaaaacctgagatctga 120
           |     ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 a-----aaacaaaacaaaacaaaacaaaacaaacaaacaaacaaaaaacctgagatctga 396

                                                                       
Query: 121 accatgatccaggctcctctcatccctataccaatactttttcaaattagtaatgactag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 accatgatccaggctcctctcatccctataccaatactttttcaaattagtaatgactag 336

                                                     
Query: 181 tctctagaactacaaagacttacctgtatatccagtattcta 222
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tctctagaactacaaagacttacctgtatatccagtattcta 294


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 222
Length of database: 622
Length adjustment: 9
Effective length of query: 213
Effective length of database: 613
Effective search space:   130569
Effective search space used:   130569
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)