BAC Information

Click to search

BAC

Clone NameMSMg01-073P20
ChromosomeX (Build37)
Map Location 121,308,356 - 121,308,636
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039751, LOC100039763, LOC665281, EG625591, LOC665325, EG382265, LOC665364, EG546368, LOC100038940, LOC100038941, EG625699, LOC100038942
Downstream geneLOC100039828, EG434843, EG665463, EG665522, LOC100038969, LOC100038978, EG665579
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073P20.T7 (MSMg01no073_p20.b1)MSMg01-073P20.TJ (MSMg01no073_p20.g1)
ACCAG297150AG297151
length716719
length of high quality
(start - end)
---285 (72 - 356)
definitionCHROMAT_FILE: MSMg01no073_p20.b1 PHD_FILE: MSMg01no073_p20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:13 2005CHROMAT_FILE: MSMg01no073_p20.g1 PHD_FILE: MSMg01no073_p20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:13 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TTTGCGGCCGCGAAANGAANACNATTTTCGNCACCGCANGGAAGNNNNGN
NNNGTAACGGCAGCCGAANGGANNANANNGGGNAANAAGAAANAAAAGGA
AGAAANAAATTTAAACCAAAAAAAAGGGGGGNNNNNNANANANANAGAAN
AGAAANANAANAAGANAAGGGAANAGGGGNGNNGAGGGGGGGGGGGAGGG
GGNGANANNGAAAGGGGGGGAGGGANAGNAGAGAGGNGNCAAGTTTTTTA
AAGANGGANAGNAGAAGGANGNGAAAGAAAGGAAGGAGAAAAAGCGAGAG
AGGGGANAGTATTAGGTCGATTTNAGNGANANAGGGGAGGGGAGAGAGAG
ATTTTTTTTTTTCCCCCCCCCCCCCCAAGAGCAGAGAGATGAANCAAAAC
GAGGGAAATANCTACAAAAAAAAAAAAAACATACGGGGGGGGGGGGGGGG
TCTCAGCTTGAGGCTCCCAATGATCGGCTGGTTAAAAGGACGAGCGCGTG
GAACTGTAAAGGAGATGTCTATGGGGAACCCCTTATAAGATGCTGTCCCC
AGGCAGGTACCTGAGCGAAGACGTTAGCCAGCTTAGCGGTAAGGTGCACG
GGGGAGGGGATAAAGGAGGGAGACCGTGCCGAAGTGGAGAAGCTATCTTT
TTTTTTTTTTTTCCGAGACGCGTGGTAGGCACGCATGGTGTGCCTCGCAG
CTGTCAGAGGTTAATG
GATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTAATTTAGACAAAGTGTACCTGATGACT
CCTTGAGCCACTGAGAGTGATTTAAGCTCCACTGCAAGCATGGGGGGACA
GTGTGAGTCTTCTTGGTGCTGAAGGGATAATTCTGAGGTTTGTGTGTCAG
AAACAGGACTTGGAGGACCCATTGACAGAGTGATAATGTTGATGTATCCA
CAAACAATCTATAAAGGATGCCATCCTTTAGAGGCAGAAAGGTTCACACC
ATGTTGGGGAAAGTAGAAATGCCAAAGACTATTGTATCTGTACAAGATCA
AGGGTCGATGTTTTTAGGACACCACCCCTGAATATTTCATGATTGAGACT
TCCTGGGAAGCTAGAACACACAAATCATGCAGGCCATGCAACAGCTTAAT
CAATCTCCAGTGTGCTAGGAGACATTTCCCAGCTAGTTCTCCTGATAAAT
CTGCTGCCTACTTCTAAAAATGGCAAGGCTTTCTCATTTTTGCTGGTCAG
CTTAATGTCTATGTCCTGGGCTCATTAACGTGCTGGCTACTCTTAAGCTC
TGAGACTTCAGTAACCCGGTCCTCGATCCTTGTACAGGTCTAATTAGGTC
ATAGGATCCTAATAATAAGCACTTGCTGTCCCTTATATCAAGGGAGCGGA
CTTTTCACGTACTACATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_p20.g1 MSMg01no073_p20.g1 CHROMAT_FILE:
MSMg01no073_p20.g1 PHD_FILE: MSMg01no073_p20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:13 2005
         (285 letters)



>mm_chrX_121308153_121308837
          Length = 685

 Score =  451 bits (233), Expect = e-131
 Identities = 269/281 (95%)
 Strand = Plus / Plus

                                                                       
Query: 4   atttagacaaagtgtacctgatgactccttgagccactgagagtgatttaagctccactg 63
           |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| 
Sbjct: 204 atttagacaaagtgtacctgatgactccttgagccattgagagagatttaagctccactt 263

                                                                       
Query: 64  caagcatggggggacagtgtgagtcttcttggtgctgaagggataattctgaggtttgtg 123
           ||||||||||| || |||||||||||||||  ||||||||| ||||||||||||||| ||
Sbjct: 264 caagcatggggagaaagtgtgagtcttcttattgctgaaggaataattctgaggtttctg 323

                                                                       
Query: 124 tgtcagaaacaggacttggaggacccattgacagagtgataatgttgatgtatccacaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgtcagaaacaggacttggaggacccattgacagagtgataatgttgatgtatccacaaa 383

                                                                       
Query: 184 caatctataaaggatgccatcctttagaggcagaaaggttcacaccatgttggggaaagt 243
           |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 384 caatctataaagaatgccatcctttagaggcagaaagattcacaccatgttggggaaagt 443

                                                    
Query: 244 agaaatgccaaagactattgtatctgtacaagatcaagggt 284
           |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 444 agaaatgccaaagactcttgtatctgtacaagatcaagggt 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)