BAC Information

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BAC

Clone NameMSMg01-076P21
ChromosomeX (Build37)
Map Location 6,044,989 - 6,045,571
singlet/doubletsinglet
Overlap geneShroom4
Upstream geneMycs, LOC668969, LOC668970, OTTMUSG00000016453, LOC627412, LOC436185, LOC668971, LOC100043936, LOC668972, Nudt11, LOC208428, AU022751, Nudt10, Bmp15
Downstream geneLOC100043937, Dgkk, Ccnb3, Akap4, Clcn5, Usp27x, 2010204K13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076P21.T7 (MSMg01no076_p21.b1)MSMg01-076P21.TJ (MSMg01no076_p21.g1)
ACCAG299434AG299435
length716702
length of high quality
(start - end)
587 (40 - 626)383 (55 - 437)
definitionCHROMAT_FILE: MSMg01no076_p21.b1 PHD_FILE: MSMg01no076_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:10 2005CHROMAT_FILE: MSMg01no076_p21.g1 PHD_FILE: MSMg01no076_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATCCGCGGAATTC
CATCTCCCTTCCCCAGAGTGGAGGATGTATGAGTGCATTTGTTAAGCAGG
TGAATGTGTGCTGGTCTGTAGCCGCACTAGCATGATGACTGTCGTGCTTC
AGCTATGTAAGGGATGGAGGGGAAAGAAATCATTAACAAGGTTCTTTGTT
GTGCTTGACCTCTTGGAAGAAATAATGGAACAGGATTGTAGGCCCTGACT
TGACCTGACAGTTTTTGTGTTAGACTTTTTGTTGTTGTACAGATAGTTTA
CCATAAAATAGGATTCAGAGTTAGCAGTTTTTCTTCGTTGGAAGACAGTA
ATTTAAATGTATTTTCTCACATAAAAGACTTTAAGAATTATCTTAGGCTT
TCAGTAGTTTTTCCATTTTCATGACTTAGAAATAAGCTTTGAAATGCAGG
CCCCTGGGGAAGGCAGGCTTTCTTTTCCTCTCTATGTATAAAGGAAAGGT
AAGACAGGAGAATCATGGCGTTTCAGGGGAAAGCCTTCTCAATAGGCCAT
ATCAGTCATCCCTTCAGGCCGAGAGAGTCATTGCAATCTGGTAAAGGGCT
GATCTTTGCAAAGTCAAGGCTGGTGGCTGCCTTGCTGCTCCAAACAGACA
GGACCCAGAGGAAAGATGCACACATACGTTCAGGCTAAACATCCATACAC
CGAATTTTTAGACAGA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTCACCTGAGGAATACCAAATGGCAGAGAAGCACCTGAAAAAATGTT
CAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTC
CACCTCACACCAGTCAGAATGTCTAAGATCAAAAATTCAGGTGACAGCAG
ATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGG
ATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGCGCTTCCTCAGA
AAATTGTACATAGTACTACTGGAGGATCCAGCAATACCTCTCCTGGGCAT
ATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGT
TCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGC
CCCTCAACAGAGGAATGGATACAGAATATGTGGTACATCTATACAATGGA
GTACTACTCAGCTATTATCAAGAATGAATTTATGACATTCCTAGACCAAT
GGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGG
ATCTCCCACTATATGTACTCCTTGACAAGTGGATATTAGCCCTAAACCTA
TGATACCCATGATATTAGATACAATTTCCTAAACACATTGAATTCAAGAA
TG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_p21.b1 MSMg01no076_p21.b1 CHROMAT_FILE:
MSMg01no076_p21.b1 PHD_FILE: MSMg01no076_p21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:10 2005
         (587 letters)



>mm_chrX_6044785_6045771
          Length = 987

 Score = 1083 bits (560), Expect = 0.0
 Identities = 578/584 (98%), Gaps = 2/584 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggaattccatctcccttccccagagtggaggatgtatgagtgcatttgttaagcaggtga 64
           ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattccatctcccctccccagtgtggaggatgtatgagtgcatttgttaagcaggtga 264

                                                                       
Query: 65  atgtgtgctggtctgtagccgcactagcatgatgactgtcgtgcttcagctatgtaaggg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgtgtgctggtctgtagccgcactagcatgatgactgtcgtgcttcagctatgtaaggg 324

                                                                       
Query: 125 atggaggggaaagaaatcattaacaaggttctttgttgtgcttgacctcttggaagaaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atggaggggaaagaaatcattaacaaggttctttgttgtgcttgacctcttggaagaaat 384

                                                                       
Query: 185 aatggaacaggattgtaggccctgacttgacctgacagtttttgtgttagactttttgtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aatggaacaggattgtaggccctgacttgacctgacagtttttgtgttagactttttgtt 444

                                                                       
Query: 245 gttgtacagatagtttaccataaaataggattcagagttagcagtttttcttcgttggaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gttgtacagatagtttaccataaaataggattcagagttagcagtttttcttcgttggaa 504

                                                                       
Query: 305 gacagtaatttaaatgtattttctcacataaaagactttaagaattatcttaggctttca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gacagtaatttaaatgtattttctcacataaaagactttaagaattatcttaggctttca 564

                                                                       
Query: 365 gtagtttttccattttcatgacttagaaataagctttgaaatgcaggcccctggggaagg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtagtttttccattttcatgacttagaaataagctttgaaatgcaggcccctggggaagg 624

                                                                       
Query: 425 caggctttcttttcctctctatgtataaaggaaaggtaagacaggagaatcatggcgttt 484
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 625 caggctttcttttcctctctatgtataaaggaaaggtaagacaggagaatcaaggcgttt 684

                                                                       
Query: 485 caggggaaagccttctcaataggccatatcagtcatccc-ttcaggccgagagagtcatt 543
           ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 685 caggggaaagccttctcaataggccatatcagtcatcccctt-aggccgagagagtcatt 743

                                                       
Query: 544 gcaatctggtaaagggctgatctttgcaaagtcaaggctggtgg 587
           |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 744 gcaatctggtaaagggctgatctttgcaaagtcaaggccggtgg 787


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space:   563729
Effective search space used:   563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)