NTTACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATGCCTGGTCCGTTTTCAAAAAGAGAACTAAGAAAAGTCC
ATTGGATTCTCTGAAGTTCTTGTTATTCTTCCTAAAAGCTGTGGCTTAGA
AGATAAGTATCATACTGTTTCCAAAGATATTATTTAATAACAGGTAGGGT
GAGAGGAATTTTTGAGTGGTTCAACAGTTATGGTTTTACTATAGTTTAGC
AATTGCATTTGCTCCCCAGCTTGGGAACTAAGTAGAAGCGCTCCTCCTAC
TTCTCCCCATAGTTTGACATATAAGTACAATACTTTGAAATGGAGCCACT
TACCATTCATTTCCATATTTGTATCTCCCCGAATCATTTGGGATGGAATT
TGAGTCACCATTGTGTAAAACCAAAACTCTGGCTTCTCCCATCCAACCCT
GCCACTACAGAATATGTGTTGATTAGTATTTGTTGAACCATTTTAGACAT
CTATACCAACAATTGACAATATGAAATTTCTGGTCTTACATTTTTGGAGA
TGACTGCTTATTTCTGAGCTTTTTTTCTGGGTCATAACACCCCCTTTCTC
TATCACTCTAATAAACTTGCGTCCGGTACTTGTCTAGAACTCTGTTTTCC
CCCGAAAAATCCTGTCTAATGTAAATTACTTCTTAAATTTATCTTATTAC
AATTCCCGGCTG

CGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTAATTATGATTATTTTCCAAG
ACAATCAAAATCTACAACAGCCATGGTTCAAGTGAGCTGAGGAATGGTGG
GTTCCTGCTGGCAGTGGACCCCGGCATTACCCATGGAATTTACCTGCAAT
ATACAGGATTTATGAGGTATAGAGATTCCAATTAATATTCCAAACGAAAA
CCTGAGTGGCTACACAATATATTACAGGATCCAAGGCCATGTAAGTATTT
CCCAACTGGGTGATATATGGAACTGATAGAAGTAAGCCAAAATATCCGTG
GAGATCCCAAGAAGGTCTGGGAACCTACAATGAACAATGCTTGCTAACTG
ACTCTTTGCCAGCGATCAGAGCTAGACATGGGGTATGGCTAGAATTGCTG
TAATCCTTTGCAAGTATAAACCCTGCGACTGGGTACTAGATGCTGTGTAT
GGAGACTTAGGATTTAATGCTTCCTTGCCTGGCATTAGTCTTGCTTTGCA
CTGACCTGCTATTATTTCCCTATTCCTTTCTGTGAAATGAAAATGCTTAC
TCTGTGCTTCATATCCCCATTATTTCTTTCCATTCACCTGTGTTTTTACT
TGTCTTGAACCTTATTTCTTTACAAAATACTCTTGTACTTGTAGTTTTTA
TCCCCGCTT

Query= MSMg01no078_i04.b1 MSMg01no078_i04.b1 CHROMAT_FILE:
MSMg01no078_i04.b1 PHD_FILE: MSMg01no078_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:51 2005
         (448 letters)



>mm_chrX_57209471_57210318
          Length = 848

 Score =  851 bits (440), Expect = 0.0
 Identities = 443/444 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatgcctggtccgttttcaaaaagagaactaagaaaagtccattggattctctga 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 gaattcatgcctggtcagttttcaaaaagagaactaagaaaagtccattggattctctga 589

                                                                       
Query: 65  agttcttgttattcttcctaaaagctgtggcttagaagataagtatcatactgtttccaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 agttcttgttattcttcctaaaagctgtggcttagaagataagtatcatactgtttccaa 529

                                                                       
Query: 125 agatattatttaataacaggtagggtgagaggaatttttgagtggttcaacagttatggt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 agatattatttaataacaggtagggtgagaggaatttttgagtggttcaacagttatggt 469

                                                                       
Query: 185 tttactatagtttagcaattgcatttgctccccagcttgggaactaagtagaagcgctcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tttactatagtttagcaattgcatttgctccccagcttgggaactaagtagaagcgctcc 409

                                                                       
Query: 245 tcctacttctccccatagtttgacatataagtacaatactttgaaatggagccacttacc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tcctacttctccccatagtttgacatataagtacaatactttgaaatggagccacttacc 349

                                                                       
Query: 305 attcatttccatatttgtatctccccgaatcatttgggatggaatttgagtcaccattgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 attcatttccatatttgtatctccccgaatcatttgggatggaatttgagtcaccattgt 289

                                                                       
Query: 365 gtaaaaccaaaactctggcttctcccatccaaccctgccactacagaatatgtgttgatt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 gtaaaaccaaaactctggcttctcccatccaaccctgccactacagaatatgtgttgatt 229

                                   
Query: 425 agtatttgttgaaccattttagac 448
           ||||||||||||||||||||||||
Sbjct: 228 agtatttgttgaaccattttagac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space:   367044
Effective search space used:   367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no078_i04.g1 MSMg01no078_i04.g1 CHROMAT_FILE:
MSMg01no078_i04.g1 PHD_FILE: MSMg01no078_i04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:51 2005
         (345 letters)



>mm_chrX_57068636_57069380
          Length = 745

 Score =  636 bits (329), Expect = 0.0
 Identities = 341/345 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttaattatgattattttccaagacaatcaaaatctacaacagccatggttcaagtgag 60
           |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 ttttaattatgattatgttccaagacaatcagaatctacaacagccatggttcaagtgag 260

                                                                       
Query: 61  ctgaggaatggtgggttcctgctggcagtggaccccggcattacccatggaatttacctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgaggaatggtgggttcctgctggcagtggaccccggcattacccatggaatttacctg 320

                                                                       
Query: 121 caatatacaggatttatgaggtatagagattccaattaatattccaaacgaaaacctgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caatatacaggatttatgaggtatagagattccaattaatattccaaacgaaaacctgag 380

                                                                       
Query: 181 tggctacacaatatattacaggatccaaggccatgtaagtatttcccaactgggtgatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggctacacaatatattacaggatccaaggccatgtaagtatttcccaactgggtgatat 440

                                                                       
Query: 241 atggaactgatagaagtaagccaaaatatccgtggagatcccaagaaggtctgggaacct 300
           |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 atggaactgagagaagtaagccaaaatatccgtggagatcccaagaagttctgggaacct 500

                                                        
Query: 301 acaatgaacaatgcttgctaactgactctttgccagcgatcagag 345
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaatgaacaatgcttgctaactgactctttgccagcgatcagag 545


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)