BAC Information

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BAC

Clone NameMSMg01-078N10
ChromosomeX (Build37)
Map Location 36,523,051 - 36,523,359
singlet/doubletsinglet
Overlap genenone
Upstream geneZbtb33, 6430550H21Rik, EG665331, Atp1b4, Gm40, EG227112, Lamp2, LOC100040971, EG665352, LOC670495, Cul4b, Mcts1, C1galt1c1, EG665369, 6030498E09Rik, LOC547171, LOC670539, LOC100039700
Downstream gene1700085A12Rik, LOC100039715, EG636756, EG636766, EG245391
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078N10.T7 (MSMg01no078_n10.b1)MSMg01-078N10.TJ (MSMg01no078_n10.g1)
ACCAG300075AG300076
length678675
length of high quality
(start - end)
519 (70 - 588)513 (76 - 588)
definitionCHROMAT_FILE: MSMg01no078_n10.b1 PHD_FILE: MSMg01no078_n10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:17 2005CHROMAT_FILE: MSMg01no078_n10.g1 PHD_FILE: MSMg01no078_n10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:17 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TTATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAATAGTCTCCGGGCCTATATACAGACATGAATGCAGGCTAAAC
AATCATTACACACACACACACACACACACACACACACACACATATATATA
TATATATATATGCCTATGTGTGTATATTTACACCAATATATATGCATATG
TGTGTATATTTGCATATATATGCATATATATGCTATGACTAAAAATATAA
ATCAGTGGAAAACATTTTAAAACCAGATTCCACCAAACACCAATCAGAAT
GGCTAAGATAAAAACCTCATGTGACAACACATATTCGAGAGGACGTGGAG
AAAGAGCAACACTACTCCATTGTTGGTAGGATTGCAAACTGGTATAACCA
CTCTCGAAATGAATCTAGAGGTTCCTCAGAAAATTGGAAATAGATCTACC
TGAAGACTCAGCTATATTACTCTTGGAAATATACCCAAAAGATTCCCTGC
CATGCCACAGGGGCACATGTTCCACTATGTTCATAGCAACCTTGTTTGTG
ATATCCAGAATGGGAACAACCTAGTTGCCCTGTGACAGACGAATGGACAC
AGAAAATGTGGTTCATTTACACAATGGAATACTACTCAGCTATTAAGAAT
AAGGACATACTGGCTTTTGCATGCAAAT
NAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTCCTAAAGCCTTGGTAGCAGAAC
ATGCTTTCTTGCCTCCTTTCACTTCTAGAAGCCACCCATATTTCTTTAGC
TCATGTCCCTTCATTTTCAGAGTTTGCCATAGCTACCCGAGGTAGCTTTA
TCTCACATCATTCTGAGGTCTTTCTTCTACCTTTGAAGCCCTTTCTTAAT
ACAGTGAACCAACCTGAATCATACAGGCTAACCTTTGCAATATGGACTTA
TTAGTACTCTTAAATTCACTTGCAGTATTATTTTCATTTTGCTTTATGGT
CTATATATTTGAAAGTGCTGGGGAAGAGGCTGTTGATGCCTTGGATGGAG
GCTTTACCCTGCTAAAATTGATGTCAAATATTCTAGGCTTTTAGAAAAGT
TTATGTATTCATGTGTATACATTTGTGTGAGAATAGAAGCTAGCTTATTG
TGTCTGTGTTTCTTCTATCACTCTCCAACTTTGCTTTCAATGTAGGGTCA
CTTCCTGTACTCAGGCTTATGTTTTCTAGGCAATGATAGAAGGCAAGATG
TTCTGCTTATCCTTCTGTCTTCACTTCCCTCAGTTATGGGTTCACTGACC
TGTGCTGGATGCCTAACTTGTTACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_n10.g1 MSMg01no078_n10.g1 CHROMAT_FILE:
MSMg01no078_n10.g1 PHD_FILE: MSMg01no078_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:17 2005
         (513 letters)



>mm_chrX_36522851_36523763
          Length = 913

 Score =  590 bits (305), Expect = e-173
 Identities = 308/309 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttcctaaagccttggtagcagaacatgctttcttgcctcctttcacttctagaagccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttcctaaagccttggtagcagaacatgctttcttgcctcctttcacttctagaagccac 260

                                                                       
Query: 61  ccatatttctttagctcatgtcccttcattttcagagtttgccatagctacccgaggtag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccatatttctttagctcatgtcccttcattttcagagtttgccatagctacccgaggtag 320

                                                                       
Query: 121 ctttatctcacatcattctgaggtctttcttctacctttgaagccctttcttaatacagt 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 ctttatctcacatcattctgaggtctttcttctacctttgtagccctttcttaatacagt 380

                                                                       
Query: 181 gaaccaacctgaatcatacaggctaacctttgcaatatggacttattagtactcttaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaccaacctgaatcatacaggctaacctttgcaatatggacttattagtactcttaaat 440

                                                                       
Query: 241 tcacttgcagtattattttcattttgctttatggtctatatatttgaaagtgctggggaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcacttgcagtattattttcattttgctttatggtctatatatttgaaagtgctggggaa 500

                    
Query: 301 gaggctgtt 309
           |||||||||
Sbjct: 501 gaggctgtt 509


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)