BAC Information

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BAC

Clone NameMSMg01-078P19
ChromosomeX (Build37)
Map Location 58,358,013 - 58,526,057
singlet/doubletdoublet
Overlap geneLOC627159, EG631990, LOC632000, LOC100039759
Upstream geneMcf2, Atp11c, LOC666517, LOC631784, LOC100039611, LOC100039621, Gm715, Hspa9-ps1, EG236831, LOC666559, LOC671636, Sox3, EG631922, Rpl7l1-ps
Downstream geneEG245440, LOC100039778, Ldoc1, LOC654353, EG627299, LOC666654, LOC385367, LOC671741
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078P19.T7 (MSMg01no078_p19.b1)MSMg01-078P19.TJ (MSMg01no078_p19.g1)
ACCAG300188AG300189
length686680
length of high quality
(start - end)		508 (44 - 551)588 (70 - 657)
definitionCHROMAT_FILE: MSMg01no078_p19.b1 PHD_FILE: MSMg01no078_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:29 2005CHROMAT_FILE: MSMg01no078_p19.g1 PHD_FILE: MSMg01no078_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,358,013 - 58,358,516)(58,525,470 - 58,526,057)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTTAACTCTCTTTGATTTGTATAATAGTAATTTTGACCTAGTTTACT
TGTATTCTAAGAGTTACAGATGAGAAGAGAAAGAGGCCATTCCAGAAGCA
TGCTAGCTGTCAGAAAGAATATGTCCTGTATAAACATTGTTAAAGATACT
TAAGAATTGGGTAGGCATCCTCACTTGAGCCCTTCGGTTTGTTAACCTTG
AGTTCTGTGGATTGTATCCTGGGTGTTCTGTACTTTTTTTTTTCCGGCTA
ATATATGCTTATTAATGATTACATACCATGCATGTCATTTTGTGTCTGAG
TTACTTCACTCAGGATGATATTTTCTAGTTCCATCTATTTGCCTGTAAAT
CTCATGATTTCCTCATTCTTAATAGCTGAATAGTATTCCATTGTGTAAAT
GAACCACATTTTCTGTATCCATTCTTCCATTGTGGGATATTTGGGTTGTT
TCCAGCTTCTGGCTATCACAAATAAAGCCGCTATGAACATGTGCCCCTGT
GGCATGGTGTGGCATCTTTTGGGTATATGCCCAAGAGTGGTATAGCCTTG
ATCTTTAGGAAGACCCCTTCCCATTTCCCGAGGAACCTTCAAATCTATTT
CCATATGGTTTGTACCAGCCTGCCCTCCCCCCCTCT

GATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTTTGGAGGCCACAAAGTATCCTCTGGAACT
GGAGTTTAAAAGCTTTTATATAGGTACCAGAAACTGAAACAAGTTCTCTG
CAAGAACAAGAGATGCTCATAACCAGTGAGCCATTTCTCCAGGCCCTCCT
TAGTCTCCTTCAAGTTTAGTTTGACCATATGACTTACTTTGGATAATTAA
AATATGATTTTATAGGGTAACATGAAAATCACTGTACTTTTTTTCCATTG
GTGAAGATATCAATGAAACATGGGATAAGGTAAAGAATTTTAACACCTGT
GGACAGCAAGTGACCCAGAGAATGTTCTACATAATCTGGGTCACTAAAAT
TTAGAAGGTCTTGTTAAGGTATTATAACCTAGTTTATCTGAATTGATACA
TTCTGCATGGTTTAAAACTTTGAATAAATATCATTCTATCTGTCATTCAG
CAATGCTTTGGTTGATAATCTAGATATTTTTACAATGGACATAGATATAG
ATGTAATTCTCATAATATATGAATATGCCTAATTTATCTATTGTCTCATT
GATAGAACACTTAGGATACTTTACAGCTCTTTGCTATTACTAATATGATG
ACATGAACATCATGGTGCATGTCTTCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_p19.b1 MSMg01no078_p19.b1 CHROMAT_FILE:
MSMg01no078_p19.b1 PHD_FILE: MSMg01no078_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:29 2005
         (508 letters)



>mm_chrX_58357809_58358716
          Length = 908

 Score =  928 bits (480), Expect = 0.0
 Identities = 498/504 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttaactctctttgatttgtataatagtaattttgacctagtttacttgtattc 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttaactctatttgatttgtataatagtaattttgacctagtttacttgtattc 264

                                                                       
Query: 65  taagagttacagatgagaagagaaagaggccattccagaagcatgctagctgtcagaaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taagagttacagatgagaagagaaagaggccattccagaagcatgctagctgtcagaaag 324

                                                                       
Query: 125 aatatgtcctgtataaacattgttaaagatacttaagaattgggtaggcatcctcacttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatatgtcctgtataaacattgttaaagatacttaagaattgggtaggcatcctcacttg 384

                                                                       
Query: 185 agcccttcggtttgttaaccttgagttctgtggattgtatcctgggtgttctgtactttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agcccttcggtttgttaaccttgagttctgtggattgtatcctgggtgttctgtactttt 444

                                                                       
Query: 245 ttttttccggctaatatatgcttattaatgattacataccatgcatgtcattttgtgtct 304
           |||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 445 ttttttccggataatatatgcttattaatgagtatataccatgcatgtcattttgtgtct 504

                                                                       
Query: 305 gagttacttcactcaggatgatattttctagttccatctatttgcctgtaaatctcatga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gagttacttcactcaggatgatattttctagttccatctatttgcctgtaaatctcatga 564

                                                                       
Query: 365 tttcctcattcttaatagctgaatagtattccattgtgtaaatgaaccacattttctgta 424
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 565 tttcctcattcttaatagctgaatagtatttcattgtgtaaatgaaccacattttctgta 624

                                                                       
Query: 425 tccattcttccattgtgggatatttgggttgtttccagcttctggctatcacaaataaag 484
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 625 tccattcttccattgtgggatatttgggttgtttccagcttctggctatcacaaataagg 684

                                   
Query: 485 ccgctatgaacatgtgcccctgtg 508
           ||||||||||||||||||||||||
Sbjct: 685 ccgctatgaacatgtgcccctgtg 708


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no078_p19.g1 MSMg01no078_p19.g1 CHROMAT_FILE:
MSMg01no078_p19.g1 PHD_FILE: MSMg01no078_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:29 2005
         (588 letters)



>mm_chrX_58525143_58526130
          Length = 988

 Score = 1122 bits (580), Expect = 0.0
 Identities = 586/588 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttggaggccacaaagtatcctctggaactggagtttaaaagcttttatataggtacca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 ctttggaggccacaaagtatcctctggaactggagtttaaaagcttttatataggtacca 856

                                                                       
Query: 61  gaaactgaaacaagttctctgcaagaacaagagatgctcataaccagtgagccatttctc 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 855 gaaactgaaacaagttctctgcaagaacaagagatgctcatagccagtgagccatttctc 796

                                                                       
Query: 121 caggccctccttagtctccttcaagtttagtttgaccatatgacttactttggataatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 caggccctccttagtctccttcaagtttagtttgaccatatgacttactttggataatta 736

                                                                       
Query: 181 aaatatgattttatagggtaacatgaaaatcactgtactttttttccattggtgaagata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 aaatatgattttatagggtaacatgaaaatcactgtactttttttccattggtgaagata 676

                                                                       
Query: 241 tcaatgaaacatgggataaggtaaagaattttaacacctgtggacagcaagtgacccaga 300
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 675 tcaatgaaacatgggataaggtaaagaatttgaacacctgtggacagcaagtgacccaga 616

                                                                       
Query: 301 gaatgttctacataatctgggtcactaaaatttagaaggtcttgttaaggtattataacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gaatgttctacataatctgggtcactaaaatttagaaggtcttgttaaggtattataacc 556

                                                                       
Query: 361 tagtttatctgaattgatacattctgcatggtttaaaactttgaataaatatcattctat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tagtttatctgaattgatacattctgcatggtttaaaactttgaataaatatcattctat 496

                                                                       
Query: 421 ctgtcattcagcaatgctttggttgataatctagatatttttacaatggacatagatata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ctgtcattcagcaatgctttggttgataatctagatatttttacaatggacatagatata 436

                                                                       
Query: 481 gatgtaattctcataatatatgaatatgcctaatttatctattgtctcattgatagaaca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gatgtaattctcataatatatgaatatgcctaatttatctattgtctcattgatagaaca 376

                                                           
Query: 541 cttaggatactttacagctctttgctattactaatatgatgacatgaa 588
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 cttaggatactttacagctctttgctattactaatatgatgacatgaa 328


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space:   565284
Effective search space used:   565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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