BAC Information

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BAC

Clone NameMSMg01-079G17
ChromosomeX (Build37)
Map Location 23,177,111 - 23,177,636
singlet/doubletsinglet
Overlap genenone
Upstream geneKlhl13, EG635719
Downstream geneWdr44, EG236749, EG214450, EG245376, LOC546271, LOC100043957, LOC100043206, LOC669000, LOC629204, EG546272, LOC100043216
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079G17.T7 (MSMg01no079_g17.b1)MSMg01-079G17.TJ (MSMg01no079_g17.g1)
ACCAG300503AG300504
length720719
length of high quality
(start - end)
529 (39 - 567)534 (66 - 599)
definitionCHROMAT_FILE: MSMg01no079_g17.b1 PHD_FILE: MSMg01no079_g17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:02 2005CHROMAT_FILE: MSMg01no079_g17.g1 PHD_FILE: MSMg01no079_g17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTG
AACTCCCCGGGCACCATGTACACACATGGTACACATACATACATGCATGC
AAAACATTAATACATGTAAAATAAATAAATAAATATTTTCAAAGGAGAAA
ATTTTAGCACTATCAAACTTGCATATCCAATCTTTACATTACTTATTAAG
ATTGCAAAGTTGTTATGTGTAAATTATACAAGATTTGGAAATATATAACC
TTAGAAGTTAGTGTATTCAGCCTCCATTGTTCATCATTAAAAGCCTGTTT
TTATTACAATTTTTATTACATACAGATGCCAATAATGTAAATGGGATCAT
ATTCAACACAGCATTGTATGTTAATTATATCATTTATCATACCTTGTAAG
ATTTCCATACTGGTACCCATGAATATGTATACTTTTTTGTGCATAATGCA
TTTCATTGTGTTCATGTGTGATAGGTTATTTAAATATTTCCCTATTGACT
AGTATTTTAATTGCTATTAATCTTTAGCTGTTAAAAGTCCTGAATCATGC
CACAACAAATATCCTTGTACATACATATTTATATCATTGTGGGGTTTTGT
AGAAATATTTCTTGGTAGATGAAAAGCTATCTCCAATGTTACAAATATTT
AAAACATTAATAAATACTGTCCAATTTCATAATATTTAAAAACGTGTGGA
TAGATCCTACATGAGGATAN
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCTAAACCTGATAAACAGCTTCAGTGAAATAGCTGG
ATATAAATTTAACTCGCCGGGTGGTGGTGGTGCACGCTTTTAATCCCAGC
ACTTGGGAGGCAGAGGCAGGCGGATTTCTAAGTTTGAGGCTACTCTGGTC
TACAAAGTGAGTGCCAGGACAGCCAGGGTTATACAGAGAAACCCTGTCTT
TAAAAAAAATGACTCACACAACTCAATGGCCTTTCTCTACACAAAGGATA
AACAGGCTGATAGAGAAATTAGGGAAACAACACCCTTCTCAATAGTCCCA
AATAATATAAAATACCTTGGTGTGACTCTAAGTAAGAAAATGAAAGATCT
GTATGACAAGAACTTCAAGTCTCTGAAGAAAGAAATTAAAGAATATCTCA
GAAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAATATAGTA
AAAATGGCTATCTTGCCAAAAGTAATCTACAGATTCAATGCAATCCCCAT
CAAAATTCCAACTCAATTCCTCAACAAATTAGAAAGGGAAATCTGCAAAT
TCTTCTGGAATAACAAAAAACCTAGGATAGCAAAAACTCTTCCAAATGAT
AAACGTACCTCTGTTGGAATCATCATGCCTGACCTCAAGCTGTATTACAA
AGCAATTGCGATTAAAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_g17.b1 MSMg01no079_g17.b1 CHROMAT_FILE:
MSMg01no079_g17.b1 PHD_FILE: MSMg01no079_g17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:02 2005
         (529 letters)



>mm_chrX_23177046_23177974
          Length = 929

 Score =  971 bits (502), Expect = 0.0
 Identities = 520/526 (98%), Gaps = 1/526 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgaactccccgggcaccatgtacacacatggtacacatacatacatgcatgcaa 64
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 gaattctgaactccatgggcaccatgtacacacatggtacacatacatacatgcatgcaa 532

                                                                       
Query: 65  aacattaatacatgtaaaataaataaataaatattttcaaaggagaaaattttagcacta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 aacattaatacatgtaaaataaataaataaatattttcaaaggagaaaattttagcacta 472

                                                                       
Query: 125 tcaaacttgcatatccaatctttacattacttattaagattgcaaagttgttatgtgtaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 471 tcaaacttgcatatccaatctttacattacttattaagattgcaaagttgtgatgtgtaa 412

                                                                       
Query: 185 attatacaagatttggaaatatataaccttagaagttagtgtattcagcctccattgttc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 attatacaagatttggaaatatataaccttagaagttagtgtattcagcctccattgttc 352

                                                                       
Query: 245 atcattaaaagcctgtttttattacaatttttattacatacagatgccaataatgtaaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 atcattaaaagcctgtttttattacaatttttattacatacagatgccaataatgtaaat 292

                                                                       
Query: 305 gggatcatattcaacacagcattgtatgttaattatatcatttatcataccttgtaagat 364
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 291 gggatcatattcaacacagcattgtatgttaattatatcatttatcatactttgtaagat 232

                                                                       
Query: 365 ttccatactggtacccatgaatatgtatac-ttttttgtgcataatgcatttcattgtgt 423
           |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 231 ttccatactggtacccatgaatatgtatactttttttgtgcatactgcatttcattgtgt 172

                                                                       
Query: 424 tcatgtgtgataggttatttaaatatttccctattgactagtattttaattgctattaat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 tcatgtgtgataggttatttaaatatttccctattgactagtattttaattgctattaat 112

                                                         
Query: 484 ctttagctgttaaaagtcctgaatcatgccacaacaaatatccttg 529
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 ctttagctgttaaaagtcctgaatcatgccacaacaaatatccttg 66


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space:   476961
Effective search space used:   476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)