Query= MSMg01no079_m23.b1 MSMg01no079_m23.b1 CHROMAT_FILE:
MSMg01no079_m23.b1 PHD_FILE: MSMg01no079_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:32 2005
(533 letters)
>mm_chrX_48559983_48560915
Length = 933
Score = 992 bits (513), Expect = 0.0
Identities = 528/533 (99%)
Strand = Plus / Plus
Query: 1 gcaagaaatcaatctctgtgtgttaaatgcgaaataatcagagtacgacagcaatggtta 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 gcaagaaatcaatctctgtgtgttaaatgcaaaataatcagagtacgacagcaatggtta 260
Query: 61 gaagactgggcacaaactgcccctcacatcattaaaatctgcaatggcatttggcaagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagactgggcacaaactgcccctcacatcattaaaatctgcaatggcatttggcaagaa 320
Query: 121 ctgggaaagtcaccaggacaatgtacagggatcatgtcaaacacttgagagttatggcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgggaaagtcaccaggacaatgtacagggatcatgtcaaacacttgagagttatggcca 380
Query: 181 ggatcctaacaagtcaaaataaggacttcctggttacctcatgaactcctaactacttct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggatcctaacaagtcaaaataaggacttcctggttacctcatgaactcctaactacttct 440
Query: 241 cccacgccttctttcatacttgccaaagtccctgcactactgtaaaaaaaaaaaagtcaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccacgccttctttcatacttgccaaagtccctgcactactgtaaaaaaaaaaaagtcaa 500
Query: 301 acttgtctggcatataggaagtggttttgcaagtccacgagccactaccaaactaaagag 360
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 501 acttgtctggcatataggaagtggttttgccagtccacgagccaccaccaaactaaagag 560
Query: 361 gtgttggttacttcgagagactggaagacaggcaaggctgtataactttatgcccagtga 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 561 gtgttggttacttcgagagactggaagacaggcaaggcagtataactttatgcccagtga 620
Query: 421 cccaacaaatgaggagctgtcatgtcagtgactcaacaaaaggagtctttatactaaact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cccaacaaatgaggagctgtcatgtcagtgactcaacaaaaggagtctttatactaaact 680
Query: 481 tgggcaacacggttccctcacctctgtccaccactgcaatccaagactcctgc 533
|||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgggcaacacgggtccctcacctctgtccaccactgcaatccaagactcctgc 733
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space: 482729
Effective search space used: 482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no079_m23.g1 MSMg01no079_m23.g1 CHROMAT_FILE:
MSMg01no079_m23.g1 PHD_FILE: MSMg01no079_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:32 2005
(566 letters)
>mm_chrX_48684617_48685577
Length = 961
Score = 953 bits (493), Expect = 0.0
Identities = 547/567 (96%), Gaps = 7/567 (1%)
Strand = Plus / Minus
Query: 1 ttagaaatcag-aattatgcttctttatttgttcttaattgtaaattgagcttgtgttgg 59
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 761 ttagaaatcagtaattatg---ctttatttgttcttaattgtaaattgagcttgtgttgg 705
Query: 60 atgatctgcatagacatttacctcagtaagttattgtgaattcaaatctttgaattggaa 119
|||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 704 atgatcggcataggcatttacctcagtaagttattgtgagttcaaatctttgaattggaa 645
Query: 120 aatctgttgggtgagtggagtactcaggacagacctggtctcctctcacttttctacctt 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 644 aatctgttgggtgagtggagtactcaggacagacctggtctcctctcacttttctatctt 585
Query: 180 tttttctttgtcaaataaaaccaaggttttacatgctagttggttgtagtggattttatt 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 584 tttttctttgtcaaataaaaccaaggttttacatgctagttggttgtagtggattttagt 525
Query: 240 agcttcctttgctcaggtgtctctagttgtctgcggctgacctcataaagggtctgttat 299
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 524 agcttcctttgctcgggtgtctccagttgtctgcggctgacctcataaagggtctgttat 465
Query: 300 catgtaagactaccagacaacaaggaatatcatgagtatcatgtgtctataggcacacac 359
||| |||||||||||||||||||||||||||||||||||| |||||||||||| || ||
Sbjct: 464 catataagactaccagacaacaaggaatatcatgagtatc--gtgtctataggcgcaaac 407
Query: 360 ctcttggcaatactcacaaatggctcccaagaagccacattcaggttctaaacttcatga 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 ctcttggcaatactcacaaatggctcccaagaagccacattcaggttctaaacttcatga 347
Query: 420 gacatgatgcagcatgttcttctgtaggtcatgctgaaaatactgatgatatagcctgac 479
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gacaggatgcagcatgttcttctgtaggtcatgctgaaaatactgatgatatagcctgac 287
Query: 480 acctggcaggcttgtttgtttgttttgccttactagtcttttgcttgtatattgtgggtt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 acctggcaggcttgtttgtttgttttgccttactagtcttttgcttgtatattgtgggtt 227
Query: 540 ctgattttttttatgcatatatgtgcg 566
|||||||||| |||||| ||||||||
Sbjct: 226 ctgatttttta-atgcatttatgtgcg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 961
Length adjustment: 10
Effective length of query: 556
Effective length of database: 951
Effective search space: 528756
Effective search space used: 528756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
