BAC Information

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BAC

Clone NameMSMg01-080D10
ChromosomeX (Build37)
Map Location 117,657,953 - 117,658,274
singlet/doubletsinglet
Overlap genePcdh11x
Upstream genePabpc5, LOC236983, LOC674318, EG545741, LOC100039461, H2afb3
Downstream geneLOC245576, LOC385419, EG434907
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080D10.T7 (MSMg01no080_d10.b1)MSMg01-080D10.TJ (MSMg01no080_d10.g1)
ACCAG301110AG301111
length695696
length of high quality
(start - end)
341 (41 - 381)322 (70 - 391)
definitionCHROMAT_FILE: MSMg01no080_d10.b1 PHD_FILE: MSMg01no080_d10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:03 2005CHROMAT_FILE: MSMg01no080_d10.g1 PHD_FILE: MSMg01no080_d10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTAATTCCCTTTTGTGCTTCCTCTTTAAGGTCTTCTACCTGTTTAGCAG
TGTTCTCCTGTATTTCTTTAAGTGAGTTATTAAAGTTCTTCTTGATGTCC
TCTACCATCATCATGAGATACGCTTTTAAATCTGGGTCTAGCTTTTCAGG
TGTGTTGGCGTGCCCTGGACTGGGCGAAGTTGGAGTACTGTGTTCTGATG
ATGGTGAGTGATCTTGGTTTCTGTTAGTAAGATTCTTAAGTTTGCCTTTT
GCCATCTGGTATTCTCTGGAGTTAGTTGTTATAGCTGTGTCTGGTTAGAG
ATTTTTCCTCTGGTGATTCTGTTAGCCTGTATCAGCAGACCTGCTAGACT
AGTTCTCTCCTCTGACTTTCTATGCTCATAGCACTCTCTGCAGGCAAGTT
CTCCTCTTACAGGGAATATTCTCAGATATCTGGCATTTGTATTTCCACCC
TGGCCAAAGATGATTGCCCTAAACCCCGTCTGTCCCATAAGCTGTGTTGC
TTTGCCCTGTTCCACACCTTGATAGCTCCTTGTACACCACTCTCTCAACT
GTGCTTTATACCTTTCGTTGTATTTTATAACCCATATTCCCCCCGTTGAT
TGTTTAGCTTCCGCCTTCCCTTTTTGCTTACACCCCACCCATTCT
TAATGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGTAGATGCCCACACATTCCAATAAAGACTT
GACCGGTTGTCTTCTTGGATGAAGGTATTTGTTCTTTTAAAACTTAAATA
GATGAAGAGTCTGAATCTAAACTTAGTATACTAGTACAAATGCAGTTTGA
GACTGATAAAGAAAAGTTACAGTGGAAATGCTTTCTTAGAAAGAATTCCA
GTTCCTGCTTCTTTAACAAAATACAGTTTAAAATTAATAATATCCTTTTA
AGGGGGAGAGCTTATATAGTATCCAAAACACTATACTAAGTATTAGGAAA
TCTGACAACTGAAGATCTGAAAACTGACAACTCCTTTGGCTTTGGAAAAT
GCCGTTTCCTTGTTTTTCCCTGAACTTATTGTGTTGAAAATGATAGCATG
GAACTCGTTGATTAATTATCTCAAGTCTTTCTTTATTCATTATTATAAGC
TTCTGCACGCTATATTTAATATACAGTAAACCAGAAAACCCATGGAAAAA
TCATAAAAAAGCAGTACTGTATACATGTACAGCTTTTCTATAACATGATA
TACATAGGTTTCTGCTCGAATACTTTAAGCACACTTTTAAAAGCCCTGCT
CCTACACCTTATTAACTGCATTTTGACAGATTATTCTTTGGTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_d10.g1 MSMg01no080_d10.g1 CHROMAT_FILE:
MSMg01no080_d10.g1 PHD_FILE: MSMg01no080_d10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:03 2005
         (322 letters)



>mm_chrX_117657753_117658474
          Length = 722

 Score =  623 bits (322), Expect = 0.0
 Identities = 322/322 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtagatgcccacacattccaataaagacttgaccggttgtcttcttggatgaaggtatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtagatgcccacacattccaataaagacttgaccggttgtcttcttggatgaaggtatt 260

                                                                       
Query: 61  tgttcttttaaaacttaaatagatgaagagtctgaatctaaacttagtatactagtacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttcttttaaaacttaaatagatgaagagtctgaatctaaacttagtatactagtacaa 320

                                                                       
Query: 121 atgcagtttgagactgataaagaaaagttacagtggaaatgctttcttagaaagaattcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgcagtttgagactgataaagaaaagttacagtggaaatgctttcttagaaagaattcc 380

                                                                       
Query: 181 agttcctgcttctttaacaaaatacagtttaaaattaataatatccttttaagggggaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agttcctgcttctttaacaaaatacagtttaaaattaataatatccttttaagggggaga 440

                                                                       
Query: 241 gcttatatagtatccaaaacactatactaagtattaggaaatctgacaactgaagatctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcttatatagtatccaaaacactatactaagtattaggaaatctgacaactgaagatctg 500

                                 
Query: 301 aaaactgacaactcctttggct 322
           ||||||||||||||||||||||
Sbjct: 501 aaaactgacaactcctttggct 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)