Query= MSMg01no080_k06.b1 MSMg01no080_k06.b1 CHROMAT_FILE:
MSMg01no080_k06.b1 PHD_FILE: MSMg01no080_k06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:37 2005
(372 letters)
>mm_chrX_35689170_35689941
Length = 772
Score = 663 bits (343), Expect = 0.0
Identities = 361/367 (98%), Gaps = 2/367 (0%)
Strand = Plus / Plus
Query: 7 ggaattcaactactggccgctatattttata-ataatacatggtcctgttgaatatgttt 65
|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 207 ggaattcaactactggt-gctatattttatacataatacatggtcctgttgaatatgttt 265
Query: 66 aactattagataagaaattaggaatgattttgtcatatgtgtttctcattcggtggcaga 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aactattagataagaaattaggaatgattttgtcatatgtgtttctcattcggtggcaga 325
Query: 126 tataatgtccacagtttcaaagaagtattcaaaagtactaagacagtttgggctgtcagc 185
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 326 tataatgtccacagtttcaaagaagtattcaaaagtactaagacagtttgtgctgtcagc 385
Query: 186 tggaacatgaaaaatggctttcttattcaaaactggatattatacagaactggattaatg 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tggaacatgaaaaatggctttcttattcaaaactggatattatacagaactggattaatg 445
Query: 246 agtatgtttgttcatgtgcaattctaactgttcaataaatttctagctgattaatttaaa 305
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 446 agtatgtttgttcatgtgcaattctaactgttcaataaatttctagttgattaatttaaa 505
Query: 306 tgggctcccatactgtgttgtaccaggatttgatttctataccatctgttgcaatgcact 365
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tgggctcccatactgtgctgtaccaggatttgatttctataccatctgttgcaatgcact 565
Query: 366 tggcttt 372
|||||||
Sbjct: 566 tggcttt 572
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space: 276969
Effective search space used: 276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no080_k06.g1 MSMg01no080_k06.g1 CHROMAT_FILE:
MSMg01no080_k06.g1 PHD_FILE: MSMg01no080_k06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:37 2005
(418 letters)
>mm_chrX_35825736_35826548
Length = 813
Score = 748 bits (387), Expect = 0.0
Identities = 409/419 (97%), Gaps = 6/419 (1%)
Strand = Plus / Minus
Query: 1 caggacagccagagctacacagagaaaccctatctc-aaaaacaaacaaacaaacaaaca 59
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 682 caggacagccagagctacacagagaaaccctatctcaaaaaacaaacaaacaaacaaaca 623
Query: 60 aaaacaaaaaactaagctagcccaatttatttcaagcccacaaaatgataacgtgtttta 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aaaacaaaaaactaagctagcccaatttatttcaagcccacaaaatgataacgtgtttta 563
Query: 120 aaataaccatgtggcttggctgatttcccagggaagcaacgaccacacattttcttctta 179
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 aaataaccatg-----tggctgatttcccagggaagcaacgaccacacattttcttctta 508
Query: 180 ttctaccttaattctggattgttatagattgttcttgtttctctttttgttaatggatac 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ttctaccttaattctggattgttatagattgttcttgtttctctttttgttaatggatac 448
Query: 240 aaatatatatgcttactaatatataaattgattattacagttgtttataatgtacacaat 299
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aaatatgtatgcttactaatatataaattgattattacagttgtttataatgtacacaat 388
Query: 300 attggatatgttgctacttagatatttttattattttaactatgtgcacaactgtccaca 359
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 387 attggatatgttgctacttagatatttttattattttaactatgtgtacaactgtccaca 328
Query: 360 tgaatatgtgtatagtgctagagaggtcaggttgtcctggagctggagttacaggtggt 418
||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 327 tgaatatgtgtatagtgctagagaggtcaagttgtcctggagttggagttacaggtggt 269
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 813
Length adjustment: 9
Effective length of query: 409
Effective length of database: 804
Effective search space: 328836
Effective search space used: 328836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
