BAC Information

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BAC

Clone NameMSMg01-081C12
ChromosomeX (Build37)
Map Location 18,949,885 - 18,950,390
singlet/doubletsinglet
Overlap genenone
Upstream gene4930578C19Rik, LOC100043098, EG628855, LOC385333, EG628871
Downstream geneLOC100043953, BC049702, LOC675558, LOC668995, LOC385336, Chst7, Slc9a7, LOC668277, LOC100043954, EG668996, Rp2h
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081C12.T7 (MSMg01no081_c12.b1)MSMg01-081C12.TJ (MSMg01no081_c12.g1)
ACCAG301824AG301825
length707704
length of high quality
(start - end)
543 (60 - 602)503 (63 - 565)
definitionCHROMAT_FILE: MSMg01no081_c12.b1 PHD_FILE: MSMg01no081_c12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:16 2005CHROMAT_FILE: MSMg01no081_c12.g1 PHD_FILE: MSMg01no081_c12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTGCGGCCGTATACGACTCCTATTCCGAGAGGATCCGCGGAATTCCACA
TAATCCCCAGACAGTGAAACTTATAGAGGAGAAAGTGGAGAAAAGCCTCG
AAGATATGGGCACAGTGGGAAAATTCCTGAATAGAACAGCAATGGCTTGT
GCTGTAAGATCGCGAATTGACAAATGGAACCTCATAAAATAGCAAAGCTT
CTGTAAGGCAAAAGACACCATCAATAAGAAAAAGGCCACGAACAGACTGG
GAAAGGATCTTTACCTATCCTAAATCAGATAGGGGGCTAATATCTAATAT
ATATAAAGAACTGAAGAAGGTGGACTCCAGAAAATCAGATAACCCCATTA
AAAAATGGGGCTCAGAGCTAAACAAAGAATTCTCACCCAAGGAATACTGA
ATGGCTGAGAAGCACCTGAAAAAAATGTTCAGCATCCTTAATCATCAGGG
AAATGCAAATCAAAACAGCCCTCAGATTCTATCTCACACCAGTCAGAATG
GCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGTGAGGATGTGGAGA
AAGAGGAACACTCCTTCACCGTTGGTGGGATTGCAAGTTTGTACCCCCAC
TCTGGAAATCAGTCTGGCACTTCCTCAGAAAATTGGCCATAGTACTACCA
GAGAATCCAGTAATACATCTCCTGGGTATATATCCAGAACATGTTCCAAC
TGGTAAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXACTGCTTGGTATACATATTTGGAAAAGAGAAACATTAA
ATAAGTATTTGTCTCATGGGATTGGGAATCATGTTACACAGTAAAATATA
ATATAATTTCTCATCAGTAGTTGTGACACCAAATCACCAATTACATCTAG
TAATATTTTAAGTCTTTCAACTTACTACCAGATGTGCAAGGTTTGTAATA
AATTGTCTCACTATCACTCCCAAAATGTATACTATTTGTTTTATTAATTT
CGGTATGTTATTTTTAGCTTATGTGGCAATAGATTCATATCGATAAAAAT
AAACTATGGCCAGGCAGTGGTGGTGCATGTCTTTAATCCAGAGGTAGGTG
GATTTCTGAGTTCCAGGCCAGCCTGGTCTACAGAGGGAGTTCTAGAACAG
CCAGGGATACACAGAGAAACCCTGTCTCAAAAAAACTCATAATAAAATAA
AATAAAATAAACTATGATTAATTTTGCATTTGTAAGTTAGTTATTTGGTC
ATCAATGAAAAATCAGGTACAAAACTCCCAGATTTATAATTTCTACATTA
TACTGAATATCTGACTATTGAAATATTCTACAATATAGTGAATATTGAAA
TGCTAAATTAGCAAAGATTTAAAGCGTTTTCCTTTGGGAAAAGTGCCAGC
CAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_c12.g1 MSMg01no081_c12.g1 CHROMAT_FILE:
MSMg01no081_c12.g1 PHD_FILE: MSMg01no081_c12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:16 2005
         (503 letters)



>mm_chrX_18949685_18950587
          Length = 903

 Score =  799 bits (413), Expect = 0.0
 Identities = 483/509 (94%), Gaps = 9/509 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgcttggtatacatatttggaaaagagaaacattaaataagtatttgtctcatgggat 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgcttggtatacatattttgaaaagagaaacattaaataagtatttgtctcatgggat 260

                                                                       
Query: 61  tgggaatcatgttacacagtaaaatataatataatttctcatcagtagttgtgacaccaa 120
           |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 tgggaatcatgtcacacagtaaaatataatataatttctcatcagtagtcgtgacaccaa 320

                                                                       
Query: 121 atcaccaattac-atctagtaatattttaagtctttcaacttactaccagatgtgcaagg 179
           ||||||||||||  | ||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 321 atcaccaattacgct-tagtaatattttaagtctttcaacttagtaccagatatgcaagg 379

                                                                       
Query: 180 tttgtaataaattgtctcactatcactcccaaaatgtatactatttgttttattaatttc 239
           ||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 380 tttgtaataaattctctcagtatcactcccaaaatatatactatttgttttattaatttc 439

                                                                       
Query: 240 ggtatgttatttttagcttatgtggcaatagattcatatcgataaaaataaactatggcc 299
           |||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 440 ggtacgttatttttagcttatgtggcaatagatttatatcaataaaaataaactatggcc 499

                                                                       
Query: 300 aggcagtggtggtgcatgtctttaatccagaggtaggtggatttctgagttccaggccag 359
           ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aggcagtggtggtgcgtgtccttaatccagaggtaggtggatttctgagttccaggccag 559

                                                                       
Query: 360 cctggtctacagagggagttctagaacagccagggatacacagagaaaccctgtctcaaa 419
           |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 560 cctggtctacagagtgagttctagaatagccagggatacacagagaaaccctgtctcaaa 619

                                                                       
Query: 420 aaaactca---taa--taaaataaaataaaataaactatgattaattttgcatttgtaag 474
           ||  ||||   |||  |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 620 aa--ctcaaaataaaataaaataaaataaaataaactatgatgaattttgcatttgtaag 677

                                        
Query: 475 ttagttatttggtcatcaatgaaaaatca 503
           |||||||||||||||||||||||||||||
Sbjct: 678 ttagttatttggtcatcaatgaaaaatca 706


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)