BAC Information

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BAC

Clone NameMSMg01-081G12
ChromosomeX (Build37)
Map Location 58,832,219 - 58,832,711
singlet/doubletsinglet
Overlap genenone
Upstream geneHspa9-ps1, EG236831, LOC666559, LOC671636, Sox3, EG631922, Rpl7l1-ps, LOC627159, EG631990, LOC632000, LOC100039759, EG245440, LOC100039778
Downstream geneLdoc1, LOC654353, EG627299, LOC666654, LOC385367, LOC671741, 4933402E13Rik, 4931400O07Rik, 1700019B21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081G12.T7 (MSMg01no081_g12.b1)MSMg01-081G12.TJ (MSMg01no081_g12.g1)
ACCAG302016AG302017
length702700
length of high quality
(start - end)
493 (60 - 552)251 (58 - 308)
definitionCHROMAT_FILE: MSMg01no081_g12.b1 PHD_FILE: MSMg01no081_g12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:36 2005CHROMAT_FILE: MSMg01no081_g12.g1 PHD_FILE: MSMg01no081_g12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGAATTCTG
GAGTCCACAAGTTAGGAACTCATGCTGAAGAAAATTAATATTTTAGAGCC
TTTCATATGCATTTAACTCTTCAGCAGGAGAAACTAATAAGAGACTTTTG
CTTTATCACTTTCTCACAGCTCCTGTTTTTGTTTTTCCCCAAGGAAAATC
TCATAGGACTGATATTTCACAAGCCTTTTTTGGGAAATGCTGGGTGGGTA
TATGAAATTTTAGTATTGATGTTTTTGTCTTGTCTATAATGAACTGTGGG
CAAACATGGATGTTTTCTCTTATGGTTTAAGGATTTCACTGTTTCCTGAA
TCTTATTCAAAATAGATCCCAAATAGTGAAAAGGCCTCTAACTACAAATA
TCTGTGTATTAGAAGTGAACAGATCTCACCATAACAAATTCATTTTTTGT
CAAACATTCAGATTTTCACTGAATTATACTTCCATGGACAACAAAAACTT
CTATGTGAACTATATATGGTCTGTTGGCATATTTGAGGATCTGTATCAGG
AAGCCATAATGCTTATCTTTCAGGGGAATTTTACCTAACCCTATCCCAGA
ATTTTCTCTGAATTCCAGTTATAAACTTCCTATAGATTAATCAAAGGAAT
CTTTTGTGGTAAATGCCACATGCATGGAAAACGTGCATCCTTTGTTAATT
AT
GTGGGAGGCCTGGCGGCGCCTGTTCAAAAATGTAGGTGAACTATAGAAGT
TCCGCGAAATTCTCACCTGAGGAAACCGAATGGCTGAGAAGCACCTGAAA
AAAATGTCCAACATCCTTAATCATCAGCGAAATGCAAATCAAAACAATGC
TGAGATTCCATCTCACACCAGCCAGAATGGCTAAGATCAAAAATTCAGGT
GACAGCAGATGTTGGCAAGGATGTGGAGAAAGAGGATCACTCCTCCATTG
TTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGTGGT
TCCTCAGATTTTTGGACATAGTACTACTGGAGGATCCTGCAATACCTCTC
CTGGGCATATATCCAAAAGATGTTCCAACTGGTAAGAAGGACACATGTTC
CACTATGTTCATAGCAGCCTTATTTATAATAGCCAAAACCTGGAAAGAAC
CCAGATGCCCCTCAACAGAAGAATGGATACAAAAAATGTGGTACATTTAC
ACAATGGAGTACTACTCAGCTATTAAAAGGAATGAATTTATGAAATTCCT
AGGCAAATGGCTGGATCTGGAGGGCATCATCCTGATTGAGGTAACACAAT
CACAAAAGAACTCAAATGATATGTACTCACTGATAAGTAGATATTAGTCC
AGACACTTAGTATACCTGAAATATAAGATAAAATTTACCAAACACATGAA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_g12.b1 MSMg01no081_g12.b1 CHROMAT_FILE:
MSMg01no081_g12.b1 PHD_FILE: MSMg01no081_g12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:36 2005
         (493 letters)



>mm_chrX_58832019_58832911
          Length = 893

 Score =  938 bits (485), Expect = 0.0
 Identities = 491/493 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttaggaactcatgctgaagaaaattaatattttagagcctttcatatgcatttaactc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttaggaactcatgctgaagaaaattaatattttagagcctttcatatgcatttaactc 260

                                                                       
Query: 61  ttcagcaggagaaactaataagagacttttgctttatcactttctcacagctcctgtttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcagcaggagaaactaataagagacttttgctttatcactttctcacagctcctgtttt 320

                                                                       
Query: 121 tgtttttccccaaggaaaatctcataggactgatatttcacaagccttttttgggaaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtttttccccaaggaaaatctcataggactgatatttcacaagccttttttgggaaatg 380

                                                                       
Query: 181 ctgggtgggtatatgaaattttagtattgatgtttttgtcttgtctataatgaactgtgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgggtgggtatatgaaattttagtattgatgtttttgtcttgtctataatgaactgtgg 440

                                                                       
Query: 241 gcaaacatggatgttttctcttatggtttaaggatttcactgtttcctgaatcttattca 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcaaacatggaggttttctcttatggtttaaggatttcactgtttcctgaatcttattca 500

                                                                       
Query: 301 aaatagatcccaaatagtgaaaaggcctctaactacaaatatctgtgtattagaagtgaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaatagatcccaaatagtgaaaaggcctctaactacaaatatctgtgtattagaagtgaa 560

                                                                       
Query: 361 cagatctcaccataacaaattcattttttgtcaaacattcagattttcactgaattatac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagatctcaccataacaaattcattttttgtcaaacattcagattttcactgaattatac 620

                                                                       
Query: 421 ttccatggacaacaaaaacttctatgtgaactatatatggtctgttggcatatttgagga 480
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 621 ttccatggacaacaaaaacttctatgtgaactatatatggtctgttggtatatttgagga 680

                        
Query: 481 tctgtatcaggaa 493
           |||||||||||||
Sbjct: 681 tctgtatcaggaa 693


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)