BAC Information

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BAC

Clone NameMSMg01-082I21
ChromosomeX (Build37)
Map Location 21,312,863 - 21,313,362
singlet/doubletsinglet
Overlap geneSlc6a14
Upstream geneLOC100043955, Araf, Syn1, Timp1, Cfp, Elk1, Uxt, A230072C01Rik, Zfp182, Spaca5, D930016N04Rik, Ssxa1, Gm1848, EG546268, EG629024, EG331392, Agtr2, EG668997
Downstream geneLOC100043180, LOC100043182, LOC100043956, EG436197, Ppia-psx_207.1, 1700023I07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082I21.T7 (MSMg01no082_i21.b1)MSMg01-082I21.TJ (MSMg01no082_i21.g1)
ACCAG302895AG302896
length680677
length of high quality
(start - end)
523 (39 - 561)508 (70 - 577)
definitionCHROMAT_FILE: MSMg01no082_i21.b1 PHD_FILE: MSMg01no082_i21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:02 2005CHROMAT_FILE: MSMg01no082_i21.g1 PHD_FILE: MSMg01no082_i21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATTC
AATTTCTATTCATCGAATTTACCAAATAAGCTGAGAATACCTCTGGGTAT
TGTTTCTTCTTAACAGTCAATAAGGTCTTTTCTCTTAGTCCCAAGGTTTA
GTTTTCCAGCATCAAAAGAGGAAGAGAGAACAAGTAAACAGAAGGACTGA
GAAGGAGAGAGAGAGTGGAAATAAAAGGAGGGGAAGAAAGAGGAAAGAAG
GGAGGAATAGAATGTCTAATAGACAGATTTATCTAAAAGAAAAATGTATA
AGCAGAAAGATCTATAATAATTATATTTTACATATTTGAAGGCTTTGGAA
ATCAACCAGAAGAACCTAAATTTGTCCTATAAACAGAATAAAGTAAGAAA
ATGGGATATATTATGCAATAATATAAAAATTGTTTCAAAGGTTCCAGGTG
TGTGCTTCAGGGAAATTTCTTTTGTGTACATAGAATTATATCTATGGGGA
GTTATTTCACCTGTGTGGGTAATTTGTGTGTGTTTGTATGCATACACATT
CCCAGGCTCAGCCACAAATGGGACATTTGTATCACATAGATAACACACCC
CAAGGCTTATGGATCACCACCGATGGGGCAGAAAGATCATTAGCCAGAGG
TTATGCAGGCCTCATAGGAAAAGGGTATCC
GATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGGCTGAGAAGC
ACCTGAAAAAATGTTCAGCATCCTTAATCATCAGGGAAATGCAAATCAAA
ACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATAAAAAT
TTCAGGTGACAGCAGATGCTGGCAAGGATGTAGTCTCTGCATGGTATATC
CTTTCCTCTTAGCTCCAAACTTTGTCTCTGTAACTCCTTCCATGGGTGTT
TTGTTCCCAATTGTAATGAGGGATGAAGTATTCACACTTTGGAGTGGATT
CTCACAGTCATCTATAGGATGGATCACAGGGCCCCCAATGGAGGAGATAG
AGAAAGCACCCATGGAGCTAAAGGGGTCTGCAACCCTATAGGTGGAACAA
CAATATGAACTAACCAGTACCCCCCAGAGCTTGTGTCTCTAGCTGCATAT
GTAGCAGAAGATGGTCTGGTTGGCCATCAGTGGAAAGAGAGGCCCATTGG
TCATGCAGACTTTATATGCCTCAGTACAGGGGAATGCCAGGGCCAAGAAG
TGGGAGTGGGTGGATGGGGGATTGAGTGCTCTNCTTTTGCTGTGAGGCTG
TGCATTGAAAATAGAGGTTTTGTATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_i21.b1 MSMg01no082_i21.b1 CHROMAT_FILE:
MSMg01no082_i21.b1 PHD_FILE: MSMg01no082_i21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:02 2005
         (523 letters)



>mm_chrX_21312440_21313362
          Length = 923

 Score =  944 bits (488), Expect = 0.0
 Identities = 497/500 (99%), Gaps = 2/500 (0%)
 Strand = Plus / Minus

                                                                       
Query: 26  cgaatttac-caaataagctgagaatac-ctctgggtattgtttcttcttaacagtcaat 83
           ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 923 cgaatttacacaaataagctgagaatacactctgggtattgtttcttcttaacagtcaat 864

                                                                       
Query: 84  aaggtcttttctcttagtcccaaggtttagttttccagcatcaaaagaggaagagagaac 143
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 aaggtcttttctcttagtcccaaggtttagttttccagcatcaaaagaggaagagagaac 804

                                                                       
Query: 144 aagtaaacagaaggactgagaaggagagagagagtggaaataaaaggaggggaagaaaga 203
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 aagtaaacagaaggactgagaaggagagagagagtggaaataaaaggaggggaagaaaga 744

                                                                       
Query: 204 ggaaagaagggaggaatagaatgtctaatagacagatttatctaaaagaaaaatgtataa 263
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ggaaagaagggaggaatagaatgtctaatagacagatttatctaaaagaaaaatgtataa 684

                                                                       
Query: 264 gcagaaagatctataataattatattttacatatttgaaggctttggaaatcaaccagaa 323
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gcagaaagatctataataattatattttacatatttgaaggctttggaaatcaaccagaa 624

                                                                       
Query: 324 gaacctaaatttgtcctataaacagaataaagtaagaaaatgggatatattatgcaataa 383
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gaacctaaatttgtcctataaacagaataaagtaagaaaatgggatatattatgcaataa 564

                                                                       
Query: 384 tataaaaattgtttcaaaggttccaggtgtgtgcttcagggaaatttcttttgtgtacat 443
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tataaaaattgtttcaaaggttccaggtgtgtgcttcagggaaatttcttttgtgtacat 504

                                                                       
Query: 444 agaattatatctatggggagttatttcacctgtgtgggtaatttgtgtgtgtttgtatgc 503
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 agaattatatctatggggagttatttcacctgtgtgggtaatttgtgtgtgtttgtatgc 444

                               
Query: 504 atacacattcccaggctcag 523
           |||||||||| |||||||||
Sbjct: 443 atacacattcacaggctcag 424


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space:   468369
Effective search space used:   468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)