BAC Information

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BAC

Clone NameMSMg01-083D06
ChromosomeX (Build37)
Map Location 15,489,402 - 15,489,673
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668991, 4930403L05Rik
Downstream geneLOC100043949, LOC100043950, Cypt6, LOC100038939, LOC668993, Maoa, Maob, Ndph
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083D06.T7 (MSMg01no083_d06.b1)MSMg01-083D06.TJ (MSMg01no083_d06.g1)
ACCAG303391AG303392
length763742
length of high quality
(start - end)
---289 (69 - 357)
definitionCHROMAT_FILE: MSMg01no083_d06.b1 PHD_FILE: MSMg01no083_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:52 2005CHROMAT_FILE: MSMg01no083_d06.g1 PHD_FILE: MSMg01no083_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAAT
TCCCTAAATATTCCCGGCTTTGGTTAATACTATAAGTTGATCTTCACAAC
TTGATATAAATGTCCTCTTGTATAACACATCACCTACTCTATTCATTGAT
CATGTAGAAGTCAAATGTGTGCCTGCATAGAACCTTCACCAATCCTTGCG
TGATCTTTGGTTTTCACGAAGGTACTCGGCATACTACTAATGAAGGCACT
TTTGATCTATAAAGTCATTCTGTATTCTGTCTGACATATATGTTAGTACG
CTCACGGCACAATGATTGTGCCATTCACGTGGTCTACCTTGTCTTAAAAA
CTATATATATATACGTACATAAACACACACAAACACATCTATACTATAAA
CACCCATCAAATTATTAAATAACTAATTCTTATAATAAATAATTATATAT
ATCATTTTGTATAATTGATATAAATTATTGTATACATATTTAATAAATTT
ATAAATATAAATAAAATAATAATTTATTTTATTGTATTATATTAATAATT
TTTTAATTCACTTATTTCTCTTTTTTCTCAATTTCTTTAATCTCTTTACT
ATTTTAATATTTTTATAATTTTCTCATTCATATTTTTAAAATACTCCATA
AATTATATATAATATAATATATATAAAATTATTTAAATTACATATCTCTA
TAAAAATAAAAATTTTATAAAAATTATTTAATCTAAATTTATTAAATTAT
TATTTATATATTA
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAGGACAGTGAAGAGGAAGTGAGCAGGGGAGG
AGGATGGGTTTTCAGAAGGGATACCAGGAAAGGAGATAACATTTGAAGTT
TAAATACAGAAATTAACTGATAGAAAAAAATATCAAATAATAAATAAATA
AATAAATAAATAAATAAATAGATAAATAAATAAATAAATTGAGTTAAAAT
ATCTTTTAATTGTTCCCTCAGCCATTAGAGAACTTCTGGTTTCTGCTTAA
GAACTGCACATCTGGAATCTAACTCTCTTCTACTTTATAATAAATATGAC
TTTGAATGTAGGAACATGGTTCAAATGTACTTTTGCTTACTTAACACTCC
ATAAAAGCATACTGCATACTGAATACTAGAGTGAGCCTTTCGCTATTTTG
TAAAAACACATAAAAGAACTAAAGGTATGAATCAGCTACGGACAACAGGG
AGACAGTTGTGGCGACGATTTAGAGCTGCAAGTTGACTATAATACCCTCT
TCTGTATAGACTATGGAGTAGTTGTTAAATGAAATACAGAAGTAATTAAT
ATAATAGGTTTTTTGTAAAGGATGGAGATAAGCAATTTTTCTTAATTATA
TCTGTTTTTATCTCTTAATAATATTTTTGTTGTATTTCTTGATTTCTTAT
CTTGTCTCATTATATTACCTTTCTGTCGTCCTTCAACCCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_d06.g1 MSMg01no083_d06.g1 CHROMAT_FILE:
MSMg01no083_d06.g1 PHD_FILE: MSMg01no083_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:52 2005
         (289 letters)



>mm_chrX_15489186_15489874
          Length = 689

 Score =  472 bits (244), Expect = e-137
 Identities = 270/288 (93%), Gaps = 16/288 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggacagtgaagaggaagtgagcaggggaggaggatgggttttcagaagggataccagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 caggacagtgaagaggaagtgagcaggggaggaggatgggttttcagaagggataccagg 276

                                                                       
Query: 61  aaaggagataacatttgaagtttaaatacagaaattaactgatagaaaaaaatatcaaat 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 277 aaaggagataacatttgaagtttaaataaagaaattaactgatagaaaaaaatatcaaat 336

                                                                       
Query: 121 aataaataaataaataaataaataaataaatagataaataaataaataaattgagttaaa 180
           |||||||||||||||||||||||||||||||| ||               ||||||||||
Sbjct: 337 aataaataaataaataaataaataaataaata-at---------------ttgagttaaa 380

                                                                       
Query: 181 atatcttttaattgttccctcagccattagagaacttctggtttctgcttaagaactgca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatcttttaattgttccctcagccattagagaacttctggtttctgcttaagaactgca 440

                                                           
Query: 241 catctggaatctaactctcttctactttataataaatatgactttgaa 288
           ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catctggtatctaactctcttctactttataataaatatgactttgaa 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)