BAC Information

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BAC

Clone NameMSMg01-084F11
ChromosomeX (Build37)
Map Location 151,706,023 - 151,706,368
singlet/doubletsinglet
Overlap geneAcot9
Upstream gene4930524N10Rik, EG434879, LOC667313, 4930542N07Rik, EG434881, LOC100040899, LOC667331, LOC100040925, LOC100040937, Magea6, Magea3, LOC626034, Magea8, Magea2, Magea5, Magea1, 1700042B14Rik, LOC245676, Amd-ps1, LOC667369, Sat1
Downstream geneLOC667383, Prdx4, LOC667394, Ptchd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084F11.T7 (MSMg01no084_f11.b1)MSMg01-084F11.TJ (MSMg01no084_f11.g1)
ACCAG304223AG304224
length681686
length of high quality
(start - end)
338 (45 - 382)335 (75 - 409)
definitionCHROMAT_FILE: MSMg01no084_f11.b1 PHD_FILE: MSMg01no084_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:21 2005CHROMAT_FILE: MSMg01no084_f11.g1 PHD_FILE: MSMg01no084_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAAGAGGATCCGCG
GAATTCTATGGACTCCCAAATTCTAATCCTCACTGACATCACTGTCCTGT
GTTCTTCTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTCTTCCTTT
CTTTTCTTCCTTTCTTCCTTTCTTCCTTTCTTCCTTCCTTCCTTCCTTTC
TTCCTTTCTTCCTTTCTTCCTTCTTTCCTTCTTTCCTTCTTTCCTTCCTT
CCTTCTTTCCTTCTTTCCTTCTTTCCTTCTTTCCTTCTTTCCTTCTTTCC
TTCCTTCCTTCCTTCCTTTTGAGTATTTAATATTAGCTATTTTCTTTATT
TACATTTCAAATGTTATCCCCTTTCCTGGTCCCCCCCAAATCCCTCTATA
CACTCCCCCTCCCCCTTGCTCATCAATCCACCCATTTCCCACTTCCTGGC
CCTGGTATTCCCCTACACTGGAGCATAGAGCCTTCACAGGACTATTAGCC
TCGCCTCCCATTGATGACCAATTATGCCATCCTCTGCTACATATCCAAGT
GGAGTCATAGGTCCCTTCATGTGTAATCTTATATTGTTGTTTTAGTTCCC
GGCAGCTCTGGTAGTAATGGTTGAAACATATTGATGTTCCTCCTATTACG
CTGTAAACCCCCTCATTTCCTTGTGGTCTGG
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATCCAGTGCCACTAGGAACAGCACA
GGGAAGGAATCAGGCCTCTGTTCTCTCAATTATGCCGCTTCCTCAGTGCA
AATACGCATACTTTTTGCCAATTACAGAGGTTTATTGAAATAAGTCAGAA
AGGAACGTTTCAATTTTTTACCCAAAGGGGCTTTATCAAAATCAAGAAGT
TAGTCTCTTTAGGATCGAACACTTTTCTGCATGTATGCACATATGTAAAG
GCCAGAGATCAAGTGTAGGTATCATTATTCAGGTGTGATCTACCTTGTTT
GTTTGTTTGTTTGTTTGTTTTGAGACCCTGTCTCTCACTGGCCTGGAGCT
TGCTAAGTTTGCTAGCCCAATTGGCCAGTGAGTTCTGGGTATCCACATGA
CTCCATGTCTTTAGTGCTGACATTACAAGCGTATGTTATCACTTATGGTT
TCTTGACATGGGTACTAGGGATCAAGGCCACTTCTCATGCCTGCATGGCA
AGTACTTTACCAAGTGAGCTACCTTCCTAGTCTGCGAACACAGACATTTA
TAAGTAAAATCTCCACCCCATCTTCTTATATACCACCTCAAATCACATCT
ACCTAGCTTAGCTACTAATTACAACCATTTTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_f11.g1 MSMg01no084_f11.g1 CHROMAT_FILE:
MSMg01no084_f11.g1 PHD_FILE: MSMg01no084_f11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:21 2005
         (335 letters)



>mm_chrX_151705966_151706700
          Length = 735

 Score =  611 bits (316), Expect = e-179
 Identities = 333/346 (96%), Gaps = 12/346 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   catccagtgccactaggaacagcacagggaaggaatcaggcctctgttctctcaattatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 catccagtgccactaggaacagcacagggaaggaatcaggcctctgttctctcaattatg 344

                                                                       
Query: 61  ccgcttcctcagtgcaaatacgcatactttttgccaattacagaggtttattgaaataag 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 cagcttcctcagtgcaaatacgcatactttttgccaattacagaggtttattgaaataag 284

                                                                       
Query: 121 tcagaaaggaacgtttcaattttttacccaaaggggctttatcaaaatcaagaagttagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tcagaaaggaacgtttcaattttttacccaaaggggctttatcaaaatcaagaagttagt 224

                                                                       
Query: 181 ctctttaggatcgaacacttttctgcatgtatgcacatatgtaaaggccagagatcaagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 ctctttaggatcgaacacttttctgcatgtatgcacatatgtaaaggccagagatcaagt 164

                                                                       
Query: 241 gtaggtatcattattcaggtgtgatctacc------------ttgtttgtttgtttgttt 288
           ||||||||||||||||||||||||||||||            ||||||||||||||||||
Sbjct: 163 gtaggtatcattattcaggtgtgatctaccttgtttgtttgtttgtttgtttgtttgttt 104

                                                         
Query: 289 gtttgttttgagaccctgtctctcactggcctggagcttgctaagt 334
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 gtttgttttgagaccctgtctctcactggcctggagcttgctaagt 58


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 735
Length adjustment: 9
Effective length of query: 326
Effective length of database: 726
Effective search space:   236676
Effective search space used:   236676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)