BAC Information

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BAC

Clone NameMSMg01-084H24
ChromosomeX (Build37)
Map Location 90,604,285 - 90,604,749
singlet/doubletsinglet
Overlap genePola1
Upstream geneMageb18, EG546347, LOC629568, LOC100042663, Rp23-438h3.2, Arx
Downstream geneEG629581, Pcyt1b, Pdk3, EG668103, LOC100042041, AU015836, EG245516, LOC100042062, EG629591, Zfx, Eif2s3x, Klhl15, LOC385495, LOC670263, LOC100042098, LOC631145
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084H24.T7 (MSMg01no084_h24.b1)MSMg01-084H24.TJ (MSMg01no084_h24.g1)
ACCAG304334AG304335
length790712
length of high quality
(start - end)
466 (106 - 571)466 (56 - 521)
definitionCHROMAT_FILE: MSMg01no084_h24.b1 PHD_FILE: MSMg01no084_h24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:32 2005CHROMAT_FILE: MSMg01no084_h24.g1 PHD_FILE: MSMg01no084_h24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NACTGTTGTTTCTTTTTTCTTTTTCCCCTCCCTACTTCTTTCCCCCTTTT
TCTATCCACACTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAA
TCCGCGGAATTCTTTGTTTAGCTCTCAGCCGCATTTTTAATGGGGTTATT
TGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTA
GTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGT
GGCCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCATAAGCTTTGCAG
TTTCATGAGGTCCCATTTGTCAATCCTCGATCTTACAGCACAAGCCATTG
CTGTTCTATTCAGGAATTTCCCCCCTGTGCCCATATCTTTGAGGCTTTTC
CCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTC
CTTGATCCACTTAGATTTGACCTTAGTACAACGAGATAGGAATGGATGGA
TTCGCATTCTTCTGCATGTTCACAACCAGTTGTGCCAGCACCATTTGTTG
AAAATGCTGTCTTTCTTCCACTGGATGGCTTTAGCTCCCTTGTCGAAGAT
CAAGTGACCATAGGTGTGTGGGTTCATTTCTGGATCTTCAATTCTATTCC
ATTGGTCTACTTGTCTGTCATTATACCGGTACCATGCTGTTTTTATCACA
ATTGCTCTGTATGAAAGCTTTAGGTCAGGCATATTCGATTCCCCCAGAGG
TTCTTTTATCCTTGAGAAGATGTTTTGGTATCCTAAGTTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXATTTATAGAATTTGTGGCAGTCATTCTGCCTCCCAATTGCTAGAA
TTACAAAAATATGCTTGGCATAAAGATTTTTTTTAATTACAGTAAAACCT
GAGCATAAAAATCATACAATATGTTTTTCTTGGTTTCTTTTCCTTTGTAA
ATGTTAATATTTTAATAATATTGTAAACTTCCTTTCTATTTCCTTACTAT
TTCAATGAGGAATAGATTACATGCAGTTATTTTTAAGAGTATCTGAGCTC
ATGTGACATTAAAGAAGGGAATATAATTACTATCAGGTCTTTGAAAACAC
CGGTCATACACTTAGTGTCAGCTACTGCCACCTATAACATTCTAAGTGTG
TTTAGTTAAGTGGAAAATTGCTCTAGAGCCAAGTTTTGTGCCAGTGAGAC
AGCTCAGCAGGTACAATCCCTTGTGTGCAGATCTGACAAGCTGAATTTGA
TCCCTAGATCTCACAGAGTGACAGGAGGGAACTGATTGAGAGTTGTCCTC
TAGCCTCCACATGTGCACCATGGCATTTAGATGTGCCCCCCCCCACACAC
ACACACACATACACTTGAATGAAGGGATGAACAAAGAAGTAACATTGTTT
AAAGCCAAGTTTCTTCCAAAAAATCAGCGTTTGATCCATCTAGGCCAGCA
CTCCTGAATGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_h24.g1 MSMg01no084_h24.g1 CHROMAT_FILE:
MSMg01no084_h24.g1 PHD_FILE: MSMg01no084_h24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:32 2005
         (466 letters)



>mm_chrX_90604085_90604949
          Length = 865

 Score =  855 bits (442), Expect = 0.0
 Identities = 460/466 (98%), Gaps = 1/466 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttatagaatttgtggcagtcattctgcctcccaattgctagaattacaaaaatatgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 665 atttatagaatttgtggcagtcattctgcctcccaattgctagaattacaaaagtatgct 606

                                                                       
Query: 61  tggcataaagattttttttaattacagtaaaacctgagcataaaaatcatacaatatgtt 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 tggcataaaga-tttttttaattacagtaaaacctgagcataaaaatcatacaatatgtt 547

                                                                       
Query: 121 tttcttggtttcttttcctttgtaaatgttaatattttaataatattgtaaacttccttt 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 546 tttcttggtttcttttcctttgcaaatgttaatattttaataatattgtaaacttccttt 487

                                                                       
Query: 181 ctatttccttactatttcaatgaggaatagattacatgcagttatttttaagagtatctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ctatttccttactatttcaatgaggaatagattacatgcagttatttttaagagtatctg 427

                                                                       
Query: 241 agctcatgtgacattaaagaagggaatataattactatcaggtctttgaaaacaccggtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 426 agctcatgtgacattaaagaagggaatataattactatcaggtctttgaaaacactggtc 367

                                                                       
Query: 301 atacacttagtgtcagctactgccacctataacattctaagtgtgtttagttaagtggaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 atacacttagtgtcagctactgccacctataacattctaagtgtgtttagttaagtggaa 307

                                                                       
Query: 361 aattgctctagagccaagttttgtgccagtgagacagctcagcaggtacaatcccttgtg 420
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 aattactctagagccaagttttgtgccagtgagacagctcagcaggtacaatcccttgtg 247

                                                         
Query: 421 tgcagatctgacaagctgaatttgatccctagatctcacagagtga 466
           |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 246 tgcagatctgacaagctgaatttgatccctagatgtcacagagtga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 865
Length adjustment: 10
Effective length of query: 456
Effective length of database: 855
Effective search space:   389880
Effective search space used:   389880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)