BAC Information

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BAC

Clone NameMSMg01-084J21
ChromosomeX (Build37)
Map Location 59,127,873 - 59,128,419
singlet/doubletsinglet
Overlap genenone
Upstream geneSox3, EG631922, Rpl7l1-ps, LOC627159, EG631990, LOC632000, LOC100039759, EG245440, LOC100039778, Ldoc1, LOC654353, EG627299
Downstream geneLOC666654, LOC385367, LOC671741, 4933402E13Rik, 4931400O07Rik, 1700019B21Rik, LOC671878, LOC666695
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084J21.T7 (MSMg01no084_j21.b1)MSMg01-084J21.TJ (MSMg01no084_j21.g1)
ACCAG304419AG304420
length716714
length of high quality
(start - end)
583 (36 - 618)547 (66 - 612)
definitionCHROMAT_FILE: MSMg01no084_j21.b1 PHD_FILE: MSMg01no084_j21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:41 2005CHROMAT_FILE: MSMg01no084_j21.g1 PHD_FILE: MSMg01no084_j21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGAXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGCGGAATTCCTA
AACCTGATACACAGCTTCAGTGAAGTAGCTGGATATAAAATTAACTCAAA
CAAGTGAATGTCCTTTCTCTACACAAAGGATAAAGAGGCTGAGAAAGAAA
TTAGGGAAACAACACCCTCCCCAATAGCCACAAACAATATAAAATACCTT
GGCATGACTCTAAGGAAGTGAAAGATCTGTAGGATAAGAACTTCAAGTCT
CTGAAGAAACAAAATAAAGAAGATCTCAGAAGATGGAAAGATATCCCATA
CTCATGGATGGGCAGGATTAATATAGTAAAAATGGCTATTTTGACAAAAG
CAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAAATCAATTCTTC
AATGAATTAGAAAGGGCAATTTGCGTTTAGGAAATTGTATCTTATATCTT
GGGTATCCAAGGTTTTGGGCTAATATCCACTTATCAGTGAGTACATATTG
TGTGAGTTCCTTTGTGAATGTGTTACCTCACTCAGGATGATGCCCTCCAG
GTCCATCCATTTGGCTAGGAATTTCATAAATTCATTCTTTTTAATAGCTG
AGTAGTACTCCATTGTGTAGATGTACCACATTTTGTACCCCGGAACTCTT
GACTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGA
AAGAGAGCCCCATTGA
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCAATTTAGGAATTGATGAAGAATTGAGGGGCTTCA
TTTTGTATAACTAATCCAAAGCTCTGGTGTGTTCATAACTACAACAGCCA
TATTTTATCCAAAACAAAATATTTCACAGCATTTCAGTAAATTGTATGAT
TAGAAGATAATTTACAGTTTAAAAAATATGAAGAAACAGATAATATGGCC
ATTTTACCTGCTGTTTACCTAACACAATATCTATATATTTTTGATAGACT
ACCTAATAAGATACCAGACAGTTTGAGTTACTAGATTTTACTATAGTTAT
ACATTTTATTACTTGGCTAAAACATACAATTTCATTTAGCCTGATTTTCT
TATTCTTTGTCAAATGCTCTTTGGTTTATTCCTCTCAAGTTAGAACAGCC
CAAATTTATACCTGAAAATGTATTCATTCTTTTCAAGATCATATACATGG
GTATTAAAGTTCCTGGGATGTTATTTTTACCATTACCCCTCCCATTTTGA
AATATGACAATAACATTTTAACAAGAGCTCTATAGTCCACTTATTATCCA
TATTTGCTAAAGACAACTAGGTTTAATACATTTCCCATTTGCTAATAGCA
GGTAATGGGAACCCCAGACTCTCTGAGACCTTCAGCTTACCTCTTCAGCT
AGTTCAGCATTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_j21.g1 MSMg01no084_j21.g1 CHROMAT_FILE:
MSMg01no084_j21.g1 PHD_FILE: MSMg01no084_j21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:41 2005
         (547 letters)



>mm_chrX_59127673_59128619
          Length = 947

 Score = 1042 bits (539), Expect = 0.0
 Identities = 545/547 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caatttaggaattgatgaagaattgaggggcttcattttgtataactaatccaaagctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caatttaggaattgatgaagaattgaggggcttcattttgtataactaatccaaagctct 260

                                                                       
Query: 61  ggtgtgttcataactacaacagccatattttatccaaaacaaaatatttcacagcatttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtgtgttcataactacaacagccatattttatccaaaacaaaatatttcacagcatttc 320

                                                                       
Query: 121 agtaaattgtatgattagaagataatttacagtttaaaaaatatgaagaaacagataata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtaaattgtatgattagaagataatttacagtttaaaaaatatgaagaaacagataata 380

                                                                       
Query: 181 tggccattttacctgctgtttacctaacacaatatctatatatttttgatagactaccta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggccattttacctgctgtttacctaacacaatatctatatatttttgatagactaccta 440

                                                                       
Query: 241 ataagataccagacagtttgagttactagattttactatagttatacattttattacttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataagataccagacagtttgagttactagattttactatagttatacattttattacttg 500

                                                                       
Query: 301 gctaaaacatacaatttcatttagcctgattttcttattctttgtcaaatgctctttggt 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 501 gctaaaacatacaatttcatttagcctgattttcttattctttgtcaaatgctctttgtt 560

                                                                       
Query: 361 ttattcctctcaagttagaacagcccaaatttatacctgaaaatgtattcattcttttca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttattcctctcaagttagaacagcccaaatttatacctgaaaatgtattcattcttttca 620

                                                                       
Query: 421 agatcatatacatgggtattaaagttcctgggatgttatttttaccattacccctcccat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agatcatatacatgggtattaaagttcctgggatgttatttttaccattacccctcccat 680

                                                                       
Query: 481 tttgaaatatgacaataacattttaacaagagctctatagtccacttattatccatattt 540
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 681 tttgaaatatgacaataacattttaacaaaagctctatagtccacttattatccatattt 740

                  
Query: 541 gctaaag 547
           |||||||
Sbjct: 741 gctaaag 747


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space:   503169
Effective search space used:   503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)