BAC Information

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BAC

Clone NameMSMg01-087J06
ChromosomeX (Build37)
Map Location 44,195,950 - 44,196,114
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040075, Actrt1, EG245405, LOC665632
Downstream geneEG434775, LOC236775, LOC100040133, LOC100040145, EG624187, Smarca1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087J06.T7 (MSMg01no087_j06.b1)MSMg01-087J06.TJ (MSMg01no087_j06.g1)
ACCAG306569AG306570
length699726
length of high quality
(start - end)
216 (17 - 232)165 (131 - 295)
definitionCHROMAT_FILE: MSMg01no087_j06.b1 PHD_FILE: MSMg01no087_j06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:45 2005CHROMAT_FILE: MSMg01no087_j06.g1 PHD_FILE: MSMg01no087_j06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTATTGTTCGAGAATCCGCGGAATTCCTGATCTTTCCACACTTTTATCA
TGAATGGGTGTTGGATCTTGTCAAATGCTTTCTCCTCATCTAACGAGATG
ATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACGTTGAT
TGATTTCCATTTATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTT
GGCCAGGATGGATGATTGCTTTAATGTGTTCCTGCATTTGGTTAGCAAGA
ATTTTATTGAGCAATTTTGCATCGATATTCCTAAGGGAAATTGGTCTGAA
GTTCTCTATCTTTGCTGCATCTTTCTGTGGCTCAGGTATCAGAGTAATTG
TGTCTTCATAGACCGAGTCGTATAGACTACCTTCTACTTCTATTCCGCTG
AAATAGTTTGTGTACAATCGAAATTAGATCTTCTTTGAAGGACTGACACA
ATTCTGTTCTCACCTCTTCTGGTCCCGGTCTCCATTCGCTTGCCAGATTC
CTATTGCCCGCCTTCTATCTCTTTACTTAATAATGAACTGCCCATATCCC
TTACTTTCTATCTCGCTTTAATATTTGACAATTGCTATTCGATTCAGAAA
ATTTGTCCTTTTTCCTCCATTTTCACTCGCCTTACTTACCCTACATTTCC
CTCCCTAAATATTTGCTTGCTGTCCCTATCCTCTCCTTTCTTCTCTCTC
CAATATAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTCCCACTTTTCCAGCCAGGTAGCAA
AGCAACTGAGGATAAGGATTTGTCCTCAGGGATAGACCTTCAGTGACCTC
CCATAATGATCAAGTATTTCAATCATCTCCCAATAACGTCACCCTGGTGA
GCAAGCCTTAAAACCATGTTTTCTGGGGTTTCATCCTGAGCAGGATAAGA
CAATGTGATGTTCACATACTTCTCCATGTAAATATTTACTTTATAAGTGA
ATAGGGACATTGTTTATCTTACTAATCAATTCATAATTGCAGCTTGCTAC
AAGCATCAAGTTTTTTTTTTTTTCACCCCCCCCCCCACTTAATAATACTG
TTGATGAGTATGAGTGTGTCCTCATCCGCTCATAAAAAAAAAACTTCCTC
GAGTGAGCTGTAAACACGACCCAATTACACCCCGTTGTTCCCATGACTAT
CAAGCTCAACCTCCACAACCTCCATTACCACTTTTCCATTCCTTCTCCAC
AATATAACGCTCTAAACCCTTAATTCATTCGTAACTTATTTTCCAATTCC
ATTCCCTAAACCCATCACTGAACTGACGCTAAACTTTATCCATTCCTCCT
CGACTTTTTTCCTGCTCCCTTCTTTCCCCCCCTTTTCCCCTTCTTTTTCC
TCCCCTTCTTTTCCCTTTCTTTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_j06.g1 MSMg01no087_j06.g1 CHROMAT_FILE:
MSMg01no087_j06.g1 PHD_FILE: MSMg01no087_j06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:45 2005
         (165 letters)



>mm_chrX_44195750_44196314
          Length = 565

 Score =  281 bits (145), Expect = 2e-80
 Identities = 160/165 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   gatagaccttcagtgacctcccataatgatcaagtatttcaatcatctcccaataacgtc 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 365 gatagaccttcagtgacctcccataatgatcaactatttcaatcatctcccaataacatc 306

                                                                       
Query: 61  accctggtgagcaagccttaaaaccatgttttctggggtttcatcctgagcaggataaga 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 305 accctggtgagcaagccttgaaaccatgttttctggggtttcatcctgagcaggagaaga 246

                                                        
Query: 121 caatgtgatgttcacatacttctccatgtaaatatttactttata 165
            ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 aaatgtgatgttcacatacttctccatgtaaatatttactttata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 165
Length of database: 565
Length adjustment: 8
Effective length of query: 157
Effective length of database: 557
Effective search space:    87449
Effective search space used:    87449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)