Query= MSMg01no088_m17.b1 MSMg01no088_m17.b1 CHROMAT_FILE:
MSMg01no088_m17.b1 PHD_FILE: MSMg01no088_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:24 2005
(374 letters)
>mm_chrX_108620941_108621713
Length = 773
Score = 692 bits (358), Expect = 0.0
Identities = 370/374 (98%), Gaps = 1/374 (0%)
Strand = Plus / Plus
Query: 1 aaaattttaaaaatctattcttcacttaaattgatgactttaaatgagtaacttcacatc 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaatttt-aaaatctattcttcacttaaattgatgactttaaatgagtaacttcacatc 259
Query: 61 tgtaagctttgcttctgcttgctacaaaataggaatcatgaaggtaaacaacagctaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tgtaagctttgcttctgcttgctacaaaataggaatcatgaaggtaaacaacagctaaag 319
Query: 121 gttacatgaaaatatattgcatgtaatatatcactttcctaagtgtatatattatttata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gttacatgaaaatatattgcatgtaatatatcactttcctaagtgtatatattatttata 379
Query: 181 agaggtaatatatttcattgtgatgttttcatacccacacataatctagttaatactcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agaggtaatatatttcattgtgatgttttcatacccacacataatctagttaatactcat 439
Query: 241 cccattaccatttcttaaccccttgctcattttatcattttcccaattccgagcagtctc 300
|||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||
Sbjct: 440 cccattaccatttcttaaccccttgctcatttaatcattttcccagttccgagtagtctc 499
Query: 301 tttaattttagcatttagtgtatgtgtgtgtatgtgtctgtgtgagtgtgtttatgtatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tttaattttagcatttagtgtatgtgtgtgtatgtgtctgtgtgagtgtgtttatgtatt 559
Query: 361 aggtatatatgtat 374
||||||||||||||
Sbjct: 560 aggtatatatgtat 573
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 773
Length adjustment: 9
Effective length of query: 365
Effective length of database: 764
Effective search space: 278860
Effective search space used: 278860
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no088_m17.g1 MSMg01no088_m17.g1 CHROMAT_FILE:
MSMg01no088_m17.g1 PHD_FILE: MSMg01no088_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:24 2005
(571 letters)
>mm_chrX_108712255_108713223
Length = 969
Score = 1065 bits (551), Expect = 0.0
Identities = 566/571 (99%), Gaps = 2/571 (0%)
Strand = Plus / Minus
Query: 1 tgtctccatctcatacactgagctggaattgctggtgggtgaccatactcactttggtct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883 tgtctccatctcatacactgagctggaattgctggtgggtgaccatactcactttggtct 824
Query: 61 ttatgcttgcttatgtagcaagtgctttactcactgagccagctctccaaccccttgttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 ttatgcttgcttatgtagcaagtgctttactcactgagccagctctccaaccccttgttt 764
Query: 121 aattaatacctcttaacttttgatacacacccccacacacacacacacattttgagataa 180
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 763 aattaatacctcttaacttttgatacacaccccc-c-cacacacacacattttgagataa 706
Query: 181 ctggccttgaactcactgtacttcaaagattggtcttaaatgcctgatccctcaatatcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 ctggccttgaactcactgtacttcaaagattggtcttaaatgcctgatccctcaatatcc 646
Query: 241 cccagtacctgggattggtgcattgttgtactagtcatcttcaaagatggcattatttgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 cccagtacctgggattggtgcattgttgtactagtcatcttcaaagatggcattatttgt 586
Query: 301 gtgataaaaaaatgttatgttaggataactactggttataccaaagcatttttagtaatt 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 585 gtgataaaaaaatgttatgttaggataactactggttatacaaaagcatttttagtaatt 526
Query: 361 agggcaataatcaatttggcagtagccctaacttttgtgctattaatgagtctttcattg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 agggcaataatcaatttggcagtagccctaacttttgtgctattaatgagtctttcattg 466
Query: 421 ggctctagaatgttagccaataacttaggatacctcagaagctccattgtagagaggatt 480
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ggctctagaatgttagccaattacttaggatacctcagaagctccattgtagagaggatt 406
Query: 481 ctagatcaagtaagaaacactatctccttaggttgaaacgtgggctgaatactccccttt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ctagatcaagtaagaaacactatctccttaggttgaaacgtgggctgaatactccccttt 346
Query: 541 tttgattagggaaataaacaatgcattgata 571
||||||||||||||||||||||| |||||||
Sbjct: 345 tttgattagggaaataaacaatgtattgata 315
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 969
Length adjustment: 10
Effective length of query: 561
Effective length of database: 959
Effective search space: 537999
Effective search space used: 537999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
