BAC Information

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BAC

Clone NameMSMg01-090I22
ChromosomeX (Build37)
Map Location 125,941,062 - 125,941,348
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040538, LOC100040550, LOC100040562
Downstream geneLOC100040570, LOC669120, Diap2, LOC100040092
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090I22.T7 (MSMg01no090_i22.b1)MSMg01-090I22.TJ (MSMg01no090_i22.g1)
ACCAG308755AG308756
length718724
length of high quality
(start - end)
294 (62 - 355)291 (75 - 365)
definitionCHROMAT_FILE: MSMg01no090_i22.b1 PHD_FILE: MSMg01no090_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:45 2005CHROMAT_FILE: MSMg01no090_i22.g1 PHD_FILE: MSMg01no090_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATTTGCGGCGCTAAACGACTCCTATTCCGAGAGATCCGCGGAATTCAC
AACTCTCCCAAAGAAATACAGGAGAACACTGCTAAAGAGTTACAAGTCCT
TAAAGAAAAACAGGACCCCACTGCTAAAGAGTTACAAGTCCTTAAAGAAA
AACAGGAAAACACAACCAAACAGGTAGAAGTCCTTATAGAAAAACAGGAA
AACACATCCAAACAGGTGATGGAAATGAACAAAACCATACTAGACCTAAA
AAGGGAAGTAGACACAATAAAGAAAACCCAAAGTGAGGCGACGCTGGAGA
TAGAAACCCTAGGAAAGAAATCTGGAACCATAGATGCCAGCATCAGCAAC
AGAATACTTTAGATGCAACACAGAATCTCAGGTGCAGAAGACTCCATAGA
GAACATCGGCACAACAATCAAAGAAAATGGAAAATGCAAAAAGATCCTAA
TTCAAAACATCCAGGAAATCCAGGACACAATGAGAAGACCAAACCTACGG
ATAATAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAGGACCAGCAAA
CATCTTCAACAATATTATTGAAGAAAACTTCCCAAATCTAAAGAAAGAGA
TGCCCATGATCATACTAGAATTCTACTGAACTCCTAATAGACTGTACCAG
AAAAGAAATTCCTCCCGTAACATATTATTCTCCAACACCTAATGTCCTAT
ATTAAGATATGATATTAA
ACGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGAGCTATGTAGAGAA
ACTGTCTCCAAAAAAAAGTGAAATTCATGCAAGCCAAAATAAAACAAAAC
AAACAAACAAAACCTCTATAACATATAACCAATTACATTGCATGCAAAGA
GTTAAGAATTCAGCCCAGACAAAAATAAATAAAACAATTTTGTGGCAATC
AGACACTAAAGAGAGAATAAAGCCTGGAAAGAAAGATAAATGGAGGAAAT
ACTAGGCAGGGAGGTTTATACATATATAAAATAAAATAGTTTGATTAATG
TTACCCTACCATTTTTTTTATACCCGCCCACCCCCCCGGTACAATTTCCA
TGTAGTTACTATACTTCAGGTGTCTGAAAAATGACAAAAAAATGCTCATG
ATAATGCTAGCTATTGCCATTGTTCTTGGCTGCCCACATGATCATGATAG
CCAGACCCTATTACTGATGACACCATGAACACTGGACACAATACTTGGGC
AAGTTATGTCAGTGCTGACCAGGAAGCAACTTTTTCTTTTTTATTCATGA
CTTTTATTTTATTATTAATATTTTCTTCATTTACTTTTTCAATGCTATCC
CAAAGTCTTCTATACCCCCTCACAAACCTGATCTCCCAAATCACCCTCCC
TGCTTCCTGTCTTTGTATTTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_i22.g1 MSMg01no090_i22.g1 CHROMAT_FILE:
MSMg01no090_i22.g1 PHD_FILE: MSMg01no090_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:45 2005
         (291 letters)



>mm_chrX_125940862_125941552
          Length = 691

 Score =  540 bits (279), Expect = e-158
 Identities = 285/287 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggacagccagagctatgtagagaaactgtctccaaaaaaaagtgaaattcatgcaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 caggacagccagagctatgtagagaaactgtctccaaaaaaaagtgaaattcatgcaggc 260

                                                                       
Query: 61  caaaataaaacaaaacaaacaaacaaaacctctataacatataaccaattacattgcatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaaataaaacaaaacaaacaaacaaaacctctataacatataaccaattacattgcatg 320

                                                                       
Query: 121 caaagagttaagaattcagcccagacaaaaataaataaaacaattttgtggcaatcagac 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaagagttaagagttcagcccagacaaaaataaataaaacaattttgtggcaatcagac 380

                                                                       
Query: 181 actaaagagagaataaagcctggaaagaaagataaatggaggaaatactaggcagggagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actaaagagagaataaagcctggaaagaaagataaatggaggaaatactaggcagggagg 440

                                                          
Query: 241 tttatacatatataaaataaaatagtttgattaatgttaccctacca 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttatacatatataaaataaaatagtttgattaatgttaccctacca 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)