BAC Information

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BAC

Clone NameMSMg01-091J23
ChromosomeX (Build37)
Map Location 50,349,839 - 50,350,234
singlet/doubletsinglet
Overlap geneHprt1
Upstream geneGpc4, Gpc3, Kis2, LOC100041925, LOC665929, 6330534C20Rik, LOC624936, LOC546298, LOC100040569, Phf6
Downstream geneC430049B03Rik, Plac1, 4632404H22Rik, 4930432H15Rik, LOC385527, Mospd1, LOC100040609, Etd, Cxx1c, LOC100040644, Cxx1a, Cxx1b, AW822252, 4930502E18Rik, 1700013H16Rik, EG547172, Zfp36l3, Xlr, LOC100040719, LOC100040730, LOC100040260, LOC100040271
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091J23.T7 (MSMg01no091_j23.b1)MSMg01-091J23.TJ (MSMg01no091_j23.g1)
ACCAG309522AG309523
length719717
length of high quality
(start - end)
398 (39 - 436)395 (70 - 464)
definitionCHROMAT_FILE: MSMg01no091_j23.b1 PHD_FILE: MSMg01no091_j23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:12 2005CHROMAT_FILE: MSMg01no091_j23.g1 PHD_FILE: MSMg01no091_j23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTXXXXXXXXXXXXXXXXXXXXXXXXATATCCGAGAGGATCCGCGGAATT
CAAATCTCCTGCCGCCATGTAGAAAGCTGGCTACGTAGAGTGCCTAGAAT
TCTAGTGCTGGGGTAATGGAGATCAGAAGATCCCTAGAGTTTGCTAGATG
GCCTGTCTTGCCAAATTGATGAGGTTCAGGTGCAGTGAAAGGCCCCATCT
CAAAAATTAAGATGGTTGTCAGTTGAAGAAGACAACCAATGTTGATCTTT
AGCCTCCACATGCATATGCACATGTACACACATACAGACACACAGAATAG
AGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAG
ATAGATAGATAGATAGACAGACAGACAAATGAGTTTGGAATGCCTGAATA
TCTCACATGTTCCTGGCCCCATTATATTCAAAGTATGCATGCAGACCATG
GAACAAATGTTTTCTGTTAAAATAGGGAATGGCTTCTTTTTCTCACAGTC
TCACATATGAGGAATGATAAAATAGAAAGTGACCTAGAGTTGCCTACACT
GTAACTTTGCATGCCTGCCTCTCCTTTATTGCCTTTGCTTTTCTCTTCCC
CTGCTTAAAAAGATCTTCGCTCCCCGCTTCCCTAACACCGGAGAGTTATA
TAAGCTATAACTCTCTTTCCCTCTTGTATGTCTGAGTGTTTTGAGCACCG
CCCTCTCTATGTATCTCTG
CATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGATATGATGAAATTTAGTTATGATTTGGC
CAATATTCCTTGAAAACTGCCAGAGCGTAGACAACCAGGTCTTGTAGTCT
ATTCGGTTTAGAGGATTTTTTGGGATGGGGACAGGAGCTCTCTATGTAGG
TCACCTTGGCCTTTAACTCGTGATTATCCCTGCCTTTGTACCCGAGTGCT
GGCATTAGAGATGTGTGACACCATGTGCAGCTTGATGCTTTAGTTCTTAC
AACACCGTGCCAGGGACTGCTGCTTCTTAGATGGGGCTTAAAAGTTGGGA
ATGTCATGTAAGATTGAGTAGTCTAATTCTTCCTGGCTTATTTCTCTCAA
TAAGTTTTTTAACAAAGATTTTTATTTATTATTATAGATAAGTACACTGT
TGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCTCATTCCAGATGA
TTGTGAGCCACCGTGAGGTTGCTGGGATTTGAACTCAGGACCTTCGGAAG
AGCAGTCAGTGTTCTTACTCGCTGAGCCATCTCTCCAGCCCCTCTCATTA
CGTTTTGATTACTAGATTAACTTATGATCTTTCAAGCTTCTCTTGCAGTT
TAGTTCCTTGTCTCGCCTTTACTGTATAGAGGCCTTGCAGATGACCTTTG
CTTGCTGGCACGCCTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_j23.g1 MSMg01no091_j23.g1 CHROMAT_FILE:
MSMg01no091_j23.g1 PHD_FILE: MSMg01no091_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:12 2005
         (395 letters)



>mm_chrX_50349639_50350433
          Length = 795

 Score =  737 bits (381), Expect = 0.0
 Identities = 393/397 (98%), Gaps = 3/397 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagatatgatgaaatttagttatgatttggccaatattccttgaaaactgccagagcgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagatatgatgaaatttagttatgatttggccaatattccttgaaaactgccagagcgta 260

                                                                       
Query: 61  gacaaccaggtcttgtagtctattcggtttagaggattttttgggatggggacaggagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 gacaaccaggtcttgtagtctattcggtttagaggattttttgggatgggggcaggagct 320

                                                                       
Query: 121 ctctatgtaggtcaccttggcctttaactcgtgattatccctgcctttgtacccgagtgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctatgtaggtcaccttggcctttaactcgtgattatccctgcctttgtacccgagtgc 380

                                                                       
Query: 181 tggcattagagatgtgtgacaccatgtgcagcttgatgctttagttcttacaacaccgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggcattagagatgtgtgacaccatgtgcagcttgatgctttagttcttacaacaccgtg 440

                                                                       
Query: 241 ccagggactgctgcttcttagatggggcttaaaagttgggaatgtcatgtaagattgagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccagggactgctgcttcttagatggggcttaaaagttgggaatgtcatgtaagattgagt 500

                                                                       
Query: 301 agtctaattcttcctggcttatttctctcaataagtttttt-aacaaagatttttattta 359
           ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 501 agtctaattcttcctggcttatttctctcaataagtttttttaa-aaagatttttattta 559

                                                
Query: 360 ttattatagataagtacactgttg-ctgtcttcagac 395
           |||||||||||||||||||||||| ||||||||||||
Sbjct: 560 ttattatagataagtacactgttggctgtcttcagac 596


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space:   303396
Effective search space used:   303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)