BAC Information

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BAC

Clone NameMSMg01-092L24
ChromosomeX (Build37)
Map Location 58,652,437 - 58,652,893
singlet/doubletsinglet
Overlap genenone
Upstream geneAtp11c, LOC666517, LOC631784, LOC100039611, LOC100039621, Gm715, Hspa9-ps1, EG236831, LOC666559, LOC671636, Sox3, EG631922, Rpl7l1-ps, LOC627159, EG631990, LOC632000, LOC100039759, EG245440
Downstream geneLOC100039778, Ldoc1, LOC654353, EG627299, LOC666654, LOC385367, LOC671741, 4933402E13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092L24.T7 (MSMg01no092_l24.b1)MSMg01-092L24.TJ (MSMg01no092_l24.g1)
ACCAG310363AG310364
length762766
length of high quality
(start - end)
460 (128 - 587)531 (160 - 690)
definitionCHROMAT_FILE: MSMg01no092_l24.b1 PHD_FILE: MSMg01no092_l24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:43 2005CHROMAT_FILE: MSMg01no092_l24.g1 PHD_FILE: MSMg01no092_l24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNCCCCNNNNNNNNNNNNNCCCCCCCCCCCCCCCCCNNNCCCCN
CNCCNNNCCCCNNNNNNCCCCCCAAGTTTTAACTTCTATAAXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTTCTTCCTTGGA
AGATGTCAGGCTATGCCATATTGAGGTATTTTACTGGTTGGATGAGGTCC
ACTCATATTATGGAGGGCAACTTGCTTTGCTTGGTTCACTAATTTAAATG
TTAATCTCATTGAAAAATATCCTTACTGAAACATGCAGAAAATTATCTTG
TCCTGATATCTGAACATCATGGTCAAGTTTGACATCTATAGAATTAACAT
AATAGCTAATTAAAAATAATTTATCTATATCAAGGGGAGTGTATCAGCAG
CTACTTTCCCACCTGTCTATATAGTATTCTCATTTACAAAGATGAGAATG
TTAACATTTCAAAGGTTATTATTTTGCTTGCCTGAGTATGACTGTACAAA
CTTGTGCATAGCTACCTTCCATAGGGCAGTGTTCATAGAGATGGCATGTT
GACTATTGCCTCCTCAAGTCATGCAATTTGAATGTGTTGTACTAGAAAGC
AATTGTCAAAGAAAGCCATTAGGCATTCTATAAATAAGAGAAACTGTATA
GTCAATCTTTTTTTTTTCAGTTTCACCTTTCTAACAGTACCTTGATGGCT
TCTGCATAAATAAATCATTGCAACCCAGTATATGAAGCAGCCACCAGTAA
CCTATGTGTTGT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCNNCCCCCC
CCCCCCCCCCCCNNNNNNCNNCCTACAAATTTCCTCGATGACATGTXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCATCATCAGAGCTAGAAATTGTTGAAAAGTAGGATTAAGAA
ACTCTACCAGCAACTGACTGAGACAAATGCATATACTCACATCCAACCAA
TTGACTGAGGTCAGAAACCCAAATGAAAGAGTTAGGGGAAGGACTCAGGA
AGAGGATTGCAACTTCATAGGAAGACCAACATTATCAGCTACCCTGGACC
CCTCAGAGCTCCCAGAGATTAAGCAACAAACAAAAGATCAAACATGGGCT
AGGCTATGGCTCTCAGCACATATTTAGCCTTGTGTGGCTTCAGTGAGAGA
TGATGAGCCTAACCCTGTAGAGACTTGATACCCCAGGGAAGGGTGACTCA
GAGAGGGTCATGTGAGCTGGGGGGTGGGGGAGCATCCTCTCAGAGGCAAA
AGGAGGAGGGTGGTGTGAAGAACTGTAGGAGGGGGCTGAGAAAGGGGCAA
CATTTGGAATAAATGAAACAATAAAAAGAAGAGGTAAAAAAGAGTGCAAT
GCATATTATTCTTGGAAAACAACATTGTTCACCTCAATCAATCTTTCTAG
TCCTATGGCCTATATGTCCTAGTCTAGTCATAGCACCACAATTAAGGTAT
GAGGATTCACTTTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_l24.b1 MSMg01no092_l24.b1 CHROMAT_FILE:
MSMg01no092_l24.b1 PHD_FILE: MSMg01no092_l24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:43 2005
         (460 letters)



>mm_chrX_58652233_58653093
          Length = 861

 Score =  868 bits (449), Expect = 0.0
 Identities = 455/457 (99%), Gaps = 1/457 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttcttccttggaagatgtcaggctatgccatattgaggtattttactggttgg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttcttccttggaagatgtcaggctatgccatattgaggtattttactggttgg 264

                                                                       
Query: 65  atgaggtccactcatattatggagggcaacttgctttgcttggttcactaatttaaatgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgaggtccactcatattatggagggcaacttgctttgcttggttcactaatttaaatgt 324

                                                                       
Query: 125 taatctcattgaaaaatatccttactgaaacatgcagaaaattatcttgtcctgatatct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taatctcattgaaaaatatccttactgaaacatgcagaaaattatcttgtcctgatatct 384

                                                                       
Query: 185 gaacatcatggtcaagtttgacatctatagaattaacataatagctaattaaaaataatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaacatcatggtcaagtttgacatctatagaattaacataatagctaattaaaaataatt 444

                                                                       
Query: 245 tatctatatcaaggggagtgtatcagcagctactttcccacctgtctatatagtattctc 304
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 445 tatctatatcaaggggagtgtatcagcagccactttcccacctgtctatatagtattctc 504

                                                                       
Query: 305 atttacaaagatgagaatgttaacatttcaaaggttattattttgcttgcctgagtatga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atttacaaagatgagaatgttaacatttcaaaggttattattttgcttgcctgagtatga 564

                                                                       
Query: 365 ctgtacaaacttgtgcatagctaccttccataggg-cagtgttcatagagatggcatgtt 423
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 565 ctgtacaaacttgtgcatagctaccttccataggggcagtgttcatagagatggcatgtt 624

                                                
Query: 424 gactattgcctcctcaagtcatgcaatttgaatgtgt 460
           |||||||||||||||||||||||||||||||||||||
Sbjct: 625 gactattgcctcctcaagtcatgcaatttgaatgtgt 661


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 861
Length adjustment: 10
Effective length of query: 450
Effective length of database: 851
Effective search space:   382950
Effective search space used:   382950
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)