BAC Information

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BAC

Clone NameMSMg01-094D09
ChromosomeX (Build37)
Map Location 130,052,808 - 130,053,151
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665846, LOC665850, LOC665854
Downstream geneLOC100040794, Pcdh19, LOC100040831, Tnmd, Tspan6, Srpx2, Sytl4, LOC665889, Cstf2, Nox1, Xkrx, Arl13a, 4732479N06Rik, LOC100040849, Tmem35, Cenpi, Drp2, Taf7l, LOC669370, LOC674122
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094D09.T7 (MSMg01no094_d09.b1)MSMg01-094D09.TJ (MSMg01no094_d09.g1)
ACCAG311441AG311442
length783777
length of high quality
(start - end)
316 (125 - 440)343 (141 - 483)
definitionCHROMAT_FILE: MSMg01no094_d09.b1 PHD_FILE: MSMg01no094_d09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:46 2005CHROMAT_FILE: MSMg01no094_d09.g1 PHD_FILE: MSMg01no094_d09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTNNNNNNNNNNNNNNNNNNNNNNNTTTNCCGCGCGCNNNNGTNNTN
NTCCCCCCCCCCGTGTTCANNNNNGTTATCTATXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGTTCAGCTCTGAA
CCCCATTTTTAATGGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGACC
TCTTTATATATATTGGATAGTAGTCCCCTATACGATTTGGGATGGGTAAA
GAACCTTTCCCAATCTGTCGGTGGTCTTTTTGTCTTATTGATGGTGTCTT
TTCCCTTGCAGAAGCTTTGCAACTTTATGAGGTCCCATTTATTGATTCTC
GATCTAACAGCACAAACCATTGCTGTTCTATTCTGGAATTTTTCCCCTGT
ACCTATATCTTCAAGGCTTTTCCCTACTTTCTCCTCTATTTTTTTCACCG
CCCCACGTTTTATGTGGAGTTCCTTAATCCACTTAGATTTGACCCCCACA
CAAAAGAGAAAGAAGTGGATCAGTTCGCATTCTTCTACATGATAACTGCC
AGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTTTTTTCCACTGGATG
GCTTTAGCTCCCTTGTCTAACATCCTGTGACCATAAGTTGCGTGGCTTCA
TCTCTGCGTCATTCCTTTCTGCCCCCTTGGCCTACCTGTCTGCCTCAATA
CCCACACATGCAGCTTCTGATCCCCGTCGCTCTGTAGTTCCGCTTTTACT
CCCGTTTGGTGTTTCCACCCCAGTTTCTTTTAG
TTTTTTTTTTNNNNCNNNNNTNTTTTCTTTTTTNTTNTTTCTTTTNCCTC
ACATCNCCNCCTATCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGAGAAGAC
AGTGACAAAAAATAATTGAAAAAAAACTGTTGTTATCCCCAAGAGAGGAG
ACTCATTTATAAGAGAGTTGGGAGAGGTACTTTAAATGTTAGGGTAGTTC
ATTCATAAAAGAGTCTACCCATTTTAATTCCACATACAGAGACTTCCATA
TGAACACAGTGTGACAAAGGAAAATGATTGTATATTTTATGAAAGCCTCT
TTGGAAAAAACACTGATTCCATGCTCGTTCTATAAACTAACACAATCATC
ATCATTGCAGTCACTGATGTAGAGTATAAGAGCAGAGGGATTTTGCAATG
GATTTGCGTGCTGTTTCTTTGGGATAAAGAAATTCAATCATTACCATTTT
CATAGAAGGGAATATACAATGGTTCTGTGGTCAGATTTAACGCAAAGTTA
TTGATTTCACTCTTTTTAATTGGCTATCACTTTTCTAATTGGATGATGAT
GTACAAGCTGCTTGACTCTCCTAAGAGAATTTCCAGGAATCCAGATTGCC
TAGTAATGATAAATGATAACTTGAGCAATCTTGCTCCCCTGCTAAGGGTA
GTTCATCGCGGATTTTTATAGAACTAAATGTCCTTTTTACATTATTCCCT
GACACTTGCCACATTTATTGACTTTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_d09.g1 MSMg01no094_d09.g1 CHROMAT_FILE:
MSMg01no094_d09.g1 PHD_FILE: MSMg01no094_d09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:46 2005
         (343 letters)



>mm_chrX_130052608_130053351
          Length = 744

 Score =  634 bits (328), Expect = 0.0
 Identities = 340/344 (98%), Gaps = 1/344 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagagaagacagtgacaaaaaataattgaaaaaaaactgttgttatccccaagagaggag 60
           |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 544 aagagaagacagtgacgaaaaataatcgaaaaaaaactgttgttatccccaagagaggag 485

                                                                       
Query: 61  actcatttataagagagttgggagaggtactttaaatgttagggtagttcattcataaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 actcatttataagagagttgggagaggtactttaaatgttagggtagttcattcataaaa 425

                                                                       
Query: 121 gagtctacccattttaattccacatacagagacttccatatgaacacagtgtgacaaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gagtctacccattttaattccacatacagagacttccatatgaacacagtgtgacaaagg 365

                                                                       
Query: 181 -aaaatgattgtatattttatgaaagcctctttggaaaaaacactgattccatgctcgtt 239
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 aaaaatgattgtatattttatgaaagcctctttggaaaaaacactgattccatgctcgtt 305

                                                                       
Query: 240 ctataaactaacacaatcatcatcattgcagtcactgatgtagagtataagagcagaggg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ctataaactaacacaatcatcatcattgcagtcactgatgtagagtataagagcagaggg 245

                                                       
Query: 300 attttgcaatggatttgcgtgctgtttctttgggataaagaaat 343
           |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 244 attttgcaatggatttgcatgctgtttctttgggataaagaaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 744
Length adjustment: 9
Effective length of query: 334
Effective length of database: 735
Effective search space:   245490
Effective search space used:   245490
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)