BAC Information

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BAC

Clone NameMSMg01-094G20
ChromosomeX (Build37)
Map Location 39,182,532 - 39,182,816
singlet/doubletsinglet
Overlap geneThoc2
Upstream geneLOC385344, Gria3, LOC100039802, LOC676077
Downstream geneLOC665488, EG333830, LOC100039838, Birc4, Stag2, LOC100039899, Sh2d1a, Odz1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094G20.T7 (MSMg01no094_g20.b1)MSMg01-094G20.TJ (MSMg01no094_g20.g1)
ACCAG311603AG311604
length1,145693
length of high quality
(start - end)
---289 (56 - 344)
definitionCHROMAT_FILE: MSMg01no094_g20.b1 PHD_FILE: MSMg01no094_g20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:04 2005CHROMAT_FILE: MSMg01no094_g20.g1 PHD_FILE: MSMg01no094_g20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGAGGGGGAGGGGGGGAGGNAGNNGNGAAGANGAANAGGAGGAGGGGGGA
GAAAANANNAAAAAATAGAGGAGAGTTGTTGTTTTGGGTGGGGGTATAGG
TAGGGGTGGAGGGTTGCGGGAGGCAACCACACGAAGTGAGAAGACAGGCA
AGACGCCGAGTTGTGTGTGTGGTTTATTTACCCAGAACATTACTCTATCT
CATAATGTATTCTTGTTACGCGTATTATTCATAGGACGATGTAGAGATCG
CTGTCATCGACACTCTACATCCCGGAAGAGTCCTTCTTACCATAGTCTAT
TACTTATAACTAGCCAATCATAATATGAACAAGCACCCCGCCCTCATGGT
CTCATCCCGGTCCACCCATCTCTCACATCGGCGCGCCGGCGGCTAAACCG
CCGGTCCGCGGAGCTTTAAGCGGCAGACCTCTATTACCAACTTATCTTTT
TGTCCTTCTCACTACGCTGATTTCATACCATTCTCTGTTAGTGTGTGAGT
TTTGAATGACAAGCAAATTATGATTGTCATAGCGTCCGCCCCCGCGCGCT
GTTGCCTCTGTTTTGTTTCTTTACAATTTACCATCCTCCCACGCTTATAG
CCGACTAATGGGCGCCGATAGACGTATAGGCCACTCCTTACCATCATTAC
GAGTTGATCAGTCGGAGTAACAAACCGATAGGAGCAGTATCGCAGTTTGC
CCGCTCGTGTGCCGTATGGACACCGTCACATGCGTCTCGATCTAGTTGCC
CCCTCCGCCGGTCTTACACTCCTGCCTTCTCACGTCTTGCAAAACGGGCA
CCAGACCATCGCATACGAAGATATGCTATACGGCCATACCGGACGGACCG
ATTTTAGGTATTAGAAACTATGACAGACCATAAGACCACGCGTTTCGCCT
ATCGCTTTACGGCTCTCGCCCCTGACCCGCCGACTTAATTCATGCGGCGT
ATCGCGCGTAAGTGCGCGCACCACACTAATTTCCTCCTCTCCTCTGCCTC
GGTGTAAGTCGTGCGAACACAGCGCTCAGCTATTTGTATGACGCCGGAAT
TGAATGTATTGACACGACTTAATTACGGCCCGAGCACCGTCACGATTCCT
GATGCGCGAATTAGCTGAATCCTCCATGTGTATTATTAACATCTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCTCAGCAGCCTAGGATGCAATTGAATGGGCATCCACACTGCTCTA
ACTTTGTCTCTTAGGTGAGGTCTTTAGTGAGCTTTTGATGAATGAGAGAG
AATGTATAAGAAAGTGATGAGAGGGCTGGAGGTATGGTTTACACAGAATG
CTATTCTCTGGCTTCCACAGGTAGTCATATACATGTGTCACACACACACA
CACACACACACACACACACACACACACGGTGGGGGGGGGCGGTGAGAGAG
AGAGACAGAGAGAGAGAGAGAGAAAGAATATAAGAATATGAATGAATCAT
TTTTTAAAGAATGAGAGAGTAAATGGGATAACTGCAGATTCCCCTCACGA
AATTGGCTACTACAGGCCTTCAATGACACACTGCTCATATTCTTGGCCTG
ACTGAACGCTTTTTGGACCTAATTCAGTGCCACTATATTACTCTCTGTTT
GTCGTCAAGATGTGTACTTCCCGGCTGAAGAGATGGCCCGTAGTTTAACA
AAACTGACTGATCTTCCTCACCTTCTGACCCCATTTTTCCTTATCCTCCA
TGTCGCCCCCCCATTTTTTTTTCCCGCCATTTCGCTGCTCCTCTCCTGTT
GCTTTTTCAACACTTTTTTCCCGTTTTCCCCCCCCCACCCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_g20.g1 MSMg01no094_g20.g1 CHROMAT_FILE:
MSMg01no094_g20.g1 PHD_FILE: MSMg01no094_g20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:04 2005
         (289 letters)



>mm_chrX_39182434_39183122
          Length = 689

 Score =  464 bits (240), Expect = e-135
 Identities = 266/286 (93%), Gaps = 19/286 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcagcagcctaggatgcaattgaatgggcatccacactgctctaactttgtctcttagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ctcagcagcctaggatgcaattgaatgggcatccacactgctctaactttgtctcttagg 324

                                                                       
Query: 61  tgaggtctttagtgagcttttgatgaatgagagagaatgtataagaaagtgatgagaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgaggtctttagtgagcttttgatgaatgagagagaatgtataagaaagtgatgagaggg 264

                                                                       
Query: 121 ctggaggtatggtttacacagaatgctattctctggcttccacaggtagtcatatacatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ctggaggtatggtttacacagaatgctattctctggcttccacaggtagtcatatacatg 204

                                                                       
Query: 181 tgt------------------cacacacacacacacacacacacacacacacacacacac 222
           |||                  |||||||||||||||||||||||||||||||||||||||
Sbjct: 203 tgtcacacacacacacacacacacacacacacacacacacacacacacacacacacacac 144

                                                         
Query: 223 ggtgggggggggcggtgagagagagagacagagagagagagagaga 268
           ||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 143 ggt-ggggggggcggggagagagagagacagagagagagagagaga 99


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 79
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)