BAC Information

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BAC

Clone NameMSMg01-094K21
ChromosomeX (Build37)
Map Location 158,997,887 - 158,998,353
singlet/doubletsinglet
Overlap geneReps2
Upstream geneRai2, Gm47, Nhs
Downstream geneLOC654358, LOC100041557, LOC667630, Rbbp7, 4932441K18Rik, LOC671250, Syap1, LOC100041607, Ctps2, S100g, LOC100040610, EG637051, Grpr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094K21.T7 (MSMg01no094_k21.b1)MSMg01-094K21.TJ (MSMg01no094_k21.g1)
ACCAG311781AG311782
length1,224710
length of high quality
(start - end)		---550 (74 - 623)
definitionCHROMAT_FILE: MSMg01no094_k21.b1 PHD_FILE: MSMg01no094_k21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:26 2005CHROMAT_FILE: MSMg01no094_k21.g1 PHD_FILE: MSMg01no094_k21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCACCAAAAAACNNNNNNNNNNNNNCCCCCNNNNNNNNTTTNTNNNNNNN
NNNNTTCCCNTTCCNTTTTTTTTTTTTTNNNNNNCCCCCCNNCTACCTCC
CCCCCCCTTTNNNNNNNTATNCCNNNNNCNNCTTTTNCTTTTTCNNCCCC
CNNNCCCCCCCCCCNCTTTTTTNTTTCNNNNNNNNNNNNNCNCCTTCCAC
CCNNTCCCCTCTTNCCNNCCCCCNNTTNNNNTNTCTCTTNCNNNCCCCTT
TNNCTTTTTCCCNNCCCNNNCTTCTTTCTCTTTTCCNNCTNTCCTTTTCT
CCCCCCTCTCCCCTCTATTTTTATTCAATTTCCTCCACCCCTTTTTNACT
ACTCCCTTTTCCCCCTCTTTTCTCCTTCCCCTCCCCCCCCTCTCTCCCTC
TTCCTCCCCCTCCTAATANTNTAACACCCCACCCATATCCNNNTTTCTTC
TTNNNNTNCCCNCCTTCCCTTTTTTTNTTTTTCATTTCCCCNTTATTCCA
TTTTTTTTTAATATTCCATCAATNTTNCCCCCCTCCTCTTCTTTCTACCC
CCCCCCACTTTCCCCCCCCNCCTTCCCCCTCTCTTNTTCCTCTCCCCCCT
CCACTACTTTCCCTTCCTCCTTCTCCCCTATTTNACTTTTACACCTATCT
ACTACCCCTTAATTTCTTTTTTATCTCCTCTCTCTCCTCACACAACCTTA
CCCTCTCTTTACTCCTTTTTACATCCTTTTTACCAATATTCTCTCCTTAC
NCATCTTCTATCTATCTTAATATCTCCCTCCCTCTTCCCAATCTCCAAAC
CAACACATAATACCCACACCTNTNCCCTACCATTACCACTTTATATTACA
TATATTCATAATACCCATTATATACCTCCCACTACCCCACTTTATTTATA
TCTATAAAATATTCTTTACTACACCNTCCTCAACCACTTCCTATCACTAA
TTACCTATAATTCTCTCCTCCATTTACAACCTCCTCCTCTTCTTTCCTTC
CCCCTCTCAACATCTCAAAATCAAACCACCTCCATACTATTTTCCCCCAC
ACTTTACAACCANTAACTAAAATATCAAATATCACCAACAACAAATCATA
TATATTATTCCTCTACATATTTCTACCTATCTTCCCTCTTAATTATANAT
ACCCACTTCTACCANCACTATTCACATATATACTTTTATTTCTACNANTC
AANAAANNNNNCCCAAANNNNNNA

CAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTAGGGGTAAGGATGGAGCCAAGTGAG
TCTGCTGCGTTTGCAATTCCTTCCTTAAGCAGAGATGGACATTTGAATAC
TAAGTACTGTGTTGGGATTTGCCTTTAAGCCAAAGTCAATTAAGCCCTTT
TGCCTAATGCTTTGCCTAAAGCCTCAGCTCTTTTTCTTTTGAAAATTCAG
TGACTCTTTTAGTAGCTTCCGTCCTCCCTTCTCCCCCTCTCAGCCTTCCT
ATGGGGATCTAGAGCTGCTCTGAAGAATTCCCCTGTGCATAGTGATCCCC
ACCTGTATGGCTGACCAATAGTGTTTTCTAGGCATGCCTTCTCTCCACAC
CCACCATGGACTCAGCTTTTCTGTTGCCTCGCTTCTCCTCAAGGTCATGT
CCAACCTTATGAGCAGTACTTTTCTTCCTTTCTTTCTTTCTTTCTTTCTT
TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC
TTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTT
CCTTCCTTCCTTCCTTTCTTTCTTTCTTTCTAAGAATTATTTATTTACCT
TATGTATATGAGCACTCTTTCTGTCTGACTTCAAACACCCTAGAAGAGAG
CATCAGATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_k21.g1 MSMg01no094_k21.g1 CHROMAT_FILE:
MSMg01no094_k21.g1 PHD_FILE: MSMg01no094_k21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:26 2005
         (550 letters)



>mm_chrX_158997756_158998706
          Length = 951

 Score =  826 bits (427), Expect = 0.0
 Identities = 457/467 (97%), Gaps = 1/467 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaggggtaaggatggagccaagtgagtctgctgcgtttgcaattccttccttaagcaga 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 598 ctaggggtaaggatggagccaagtgagtctgatgcgtttgcaattccttccttaagcaga 539

                                                                       
Query: 61  gatggacatttgaatactaagtactgtgttgggatttgcctttaagccaaagtcaattaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gatggacatttgaatactaagtactgtgttgggatttgcctttaagccaaagtcaattaa 479

                                                                       
Query: 121 gcccttttgcctaatgctttgcctaaagcctcagctctttttcttttgaaaattcagtga 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 478 gcccttttgcctaatgctttgcctaaagcctcagttctttttcttttgaaaattcagtga 419

                                                                       
Query: 181 ctcttttagtagcttccgtcctcccttctccccctctcagccttcctatggggatctaga 240
           ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 418 ctcttttagtagcttccatcctaccttctccccctctcagccttcctatggggatctaga 359

                                                                       
Query: 241 gctgctctgaagaattcccctgtgcatagtgatccccacctgtatggctgaccaatagtg 300
           ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 358 gctgctctgaagaattcccctgtgcatagtgattcccaactgtatggctgaccaatagtg 299

                                                                       
Query: 301 ttttctaggcatgccttctctccacacccacc-atggactcagcttttctgttgcctcgc 359
           |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| 
Sbjct: 298 ttttctaggcatgccttctctccatacccacccatggactcagcttttctgttgcctcgt 239

                                                                       
Query: 360 ttctcctcaaggtcatgtccaaccttatgagcagtacttttcttcctttctttctttctt 419
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 238 ttctcctcaaggtcatgtccaaccttatgagcagtacttttctttctttctttctttctt 179

                                                          
Query: 420 tctttctttctttctttctttctttctttctttctttctttctttct 466
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 tctttctttctttctttctttctttctttctttctttctttctttct 132


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 83
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 951
Length adjustment: 10
Effective length of query: 540
Effective length of database: 941
Effective search space:   508140
Effective search space used:   508140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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