BAC Information

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BAC

Clone NameMSMg01-094M10
ChromosomeX (Build37)
Map Location 111,226,022 - 111,226,505
singlet/doubletsinglet
Overlap genenone
Upstream geneChm, EG664918, Dach2, LOC237016, EG664945
Downstream geneEG634881, LOC100039201, Klhl4, Gm1866, EG546361, EG237009, 4930524E20Rik, LOC237008, EG664969, EG546362
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094M10.T7 (MSMg01no094_m10.b1)MSMg01-094M10.TJ (MSMg01no094_m10.g1)
ACCAG311853AG311854
length682690
length of high quality
(start - end)
337 (27 - 363)483 (57 - 539)
definitionCHROMAT_FILE: MSMg01no094_m10.b1 PHD_FILE: MSMg01no094_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:34 2005CHROMAT_FILE: MSMg01no094_m10.g1 PHD_FILE: MSMg01no094_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCGCTATACGACTCCTATAGCGAGAGGATCCGCGGAATTCTAATGG
AATCACCAAATATAAGGAGAGACAAACCCCCAACTAGTCATCTCTTGCCA
CCAAGTAAAATCTCCAGTAACACGTATAGGTTACATCTAATTCAGTTCTT
GGCAAAAAGGTCTCATGAAAACCCTGCTGGTTTCTCTTCACAAACTGATG
ATGAGGTCCTCTTGCTGAAAACAACACCGAAACAATTCATTGAACATGGA
GAAATCAAGCTGGTGCCTAGTTAGAGACTTCACCCCTAGTAACTATTATT
CATGTCGGTACTTTTCCCACTGACAAAAGATTAGATAAACAACAAATCTG
CTACGAACTCTTCTATATACAGTGTTAGCTTGCCTGCATGATACACAGTG
GCTCAACTGTGAAACAAATGTTATAAAAGTGATATTCATTTATTTGAGTA
CAATTAAGGCTCACTCCATAGTATAAAACCCATGCATGGCCCTGCTCAGG
TGGCCAAGAATATGAGACTAGATTGGCCATGGACTTACATGAAAACCAAA
TTTTATTGTTTCTGCTACAAGAACATAGCAATAAAATGACTCTTAGTAAT
ATTCTACTATATTTATAGATCAGTGTCCCACTTGCCTATCCTCATAAAGG
CTTCCTTCTGTAATATATGGCAACAGAATTAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCATTTTTATTGTAAGAGAGAATGACAAATGAATATTAAAAATTT
GATTACATGAAAGACATTCATGAGCATTTTCCTTCAAGGAAAAAAAAGGT
CATTTGCTTTTTTTAATTTATGTATGTATTTATTTGTTAAAATCTACTGT
TTTGTCATCAGTGTGTATGTTTATATCAAGAACTATTTCCCTAAGAAAAA
ATAGTGCCAAGAAATTTAAACTTGAAAAAATAATCTTATGTTTTTTGAAA
TTATTATTAATCAGAAACAGGAAATTCAGCAGCATGAGGTTTATTATTTT
AGAAAACAAAGTTACTGGATGAGAATTTTAGCATGACTTCCTAAGTTCTC
TACACTATCCCATTTCTCATCCCAGAGCACAAATCTGATACAACCAACTC
TAATAATATATGCTTGTTTTACATATATTCCTTGACCTATTGTTTACAGA
AATTTCTCTTAGCCCTAAAGGGAATAAATATCTTCGGCACGAATATAAGT
ATTTGAGATTTTTAAAACCTCTCTAGATCCAAATACCTCATATATAGAAA
GCGAAAATTCTGAACTTATTTTGCTTAAGTAGAGAGCCATATATTTACAG
TCTGAAGATAACACTTGATTACCTGTACTATGACCCTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_m10.g1 MSMg01no094_m10.g1 CHROMAT_FILE:
MSMg01no094_m10.g1 PHD_FILE: MSMg01no094_m10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:34 2005
         (483 letters)



>mm_chrX_111225822_111226705
          Length = 884

 Score =  913 bits (472), Expect = 0.0
 Identities = 481/484 (99%), Gaps = 1/484 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   catttttattgtaagagagaatgacaaatgaatattaaaaatttgattacatgaaagaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catttttattgtaagagagaatgacaaatgaatattaaaaatttgattacatgaaagaca 260

                                                                       
Query: 61  ttcatgagcattttccttcaaggaaaaaaaaggtcatttgctttttttaatttatgtatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcatgagcattttccttcaaggaaaaaaaaggtcatttgctttttttaatttatgtatg 320

                                                                       
Query: 121 tatttatttgttaaaatctactgttttgtcatcagtgtgtatgtttatatcaagaactat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatttatttgttaaaatctactgttttgtcatcagtgtgtatgtttatatcaagaactat 380

                                                                       
Query: 181 ttccctaag-aaaaaatagtgccaagaaatttaaacttgaaaaaataatcttatgttttt 239
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttccctaaggaaaaaatagtgccaagaaatttaaacttgaaaaaataatcttatgttttt 440

                                                                       
Query: 240 tgaaattattattaatcagaaacaggaaattcagcagcatgaggtttattattttagaaa 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaaattattattaatcagaaacaggaaattcagcagcatgaggtttattattttagaaa 500

                                                                       
Query: 300 acaaagttactggatgagaattttagcatgacttcctaagttctctacactatcccattt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaaagttactggatgagaattttagcatgacttcctaagttctctacactatcccattt 560

                                                                       
Query: 360 ctcatcccagagcacaaatctgatacaaccaactctaataatatatgcttgttttacata 419
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctcaccccagagcacaaatctgatacaaccaactctaataatatatgcttgttttacata 620

                                                                       
Query: 420 tattccttgacctattgtttacagaaatttctcttagccctaaagggaataaatatcttc 479
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 621 tattccttgacctattgtttacagaaatttctcttagccctaaagggaaaaaatatcttc 680

               
Query: 480 ggca 483
           ||||
Sbjct: 681 ggca 684


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 884
Length adjustment: 10
Effective length of query: 473
Effective length of database: 874
Effective search space:   413402
Effective search space used:   413402
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)