BAC Information

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BAC

Clone NameMSMg01-095B05
ChromosomeX (Build37)
Map Location 60,504,168 - 60,504,456
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC671741, 4933402E13Rik, 4931400O07Rik, 1700019B21Rik, LOC671878, LOC666695, EG627420
Downstream geneLOC666729, EG627470, 3830417A13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095B05.T7 (MSMg01no095_b05.b1)MSMg01-095B05.TJ (MSMg01no095_b05.g1)
ACCAG312076AG312077
length704707
length of high quality
(start - end)
611 (45 - 655)290 (74 - 363)
definitionCHROMAT_FILE: MSMg01no095_b05.b1 PHD_FILE: MSMg01no095_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:59 2005CHROMAT_FILE: MSMg01no095_b05.g1 PHD_FILE: MSMg01no095_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTCTCGCTCTGAGCCCCATTTTTAATGGGGTTGTTTGATATAT
TAGATATTAGTCCCCTATCTCATTTAGGATAGGTAAATATCCTTTCCCAA
TCTGTTGGTGACCTTTTTGTCTTTTTTTTTTTCAAGACAGGGTTTCTCTG
TATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCTG
GCCTCGAACTTAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTA
AAGGCATGCACCACCACTGCCCAGCTCCTTTTTGTCTTATTGATGGTGTC
TTTTGCCTTATAGAAGCTTTGCAATTTTATGAGGTCCCATTTTTTGATTC
TTGATCTTACAGCACAAGCCATTGTTGTTCTAATCAGGAATTTTTTCCCC
TGTGCTCATATCTTCTAGGCTATTCCCCATTTTCTCCTCTATAAGTTTAA
CTGTCTCTGGTTTTATGTGGAGTTCCTTGATCCACTTAGATTTGACCTTA
TTAAAAAGAGATAGGAATGGATCAAGTCACATTCTTCTATGTGATAAGCA
CCAGTTGTGCCAGCACCATTTGTCAAAAATGCTGTTTTTTCCCCCCATTG
GATGGTTTTCACTCCCTTGTTCAAGATAAAGGACCATAGGTGTGTGGGTT
CATG
GAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGTTTCACTTCCATACTCTACAAAAT
TGGAATGAAAGATCACTTAACTAATTGTCAAGTAATTAGTGGAGTACTTA
TTGCCCAAAAAAGATGATCAATTCAACATTACCATAGTTCTTTTCTTCTC
TTTTATAAAAAAAATAAAATCTATGCACTTGAATTTCCTTAATTTTTAAT
GTGTTCAATGATCAAAATAAAAGTTCCTTCACAGAATTGACAAAGAAAAA
GGCATATATTTTAAAAACAAATATTTAAGTTTCCATTACTGAGTATTGAT
AGTGACTATATGAAGAAAAGGCTGTCATAGTCCCTTCACTAAAAGCTTAA
AATTAATGATAAATAAATAAATATATATATATATATTTTAAGGAACCACA
CACAGAAATTTCTTTCTATGCGACAAAAAATATCTAGCAAAAATAGATGT
CATTGAAAAATGTCTCTAAATGTCTAATGGAGAAATGGACAGTTAGAATG
CACTAGATTTTGACTAGCCAAATTCAGTAGCAAGTAATTCCAAACATCTC
TGTGTACATTACTCAAGATGAATGCAGAAAGAGATTATGGTATGTTCTAA
AAACCTTCTTAACTACACATGAGACAAATTTAGTAGTGCTACTTAATGTT
GAGAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_b05.g1 MSMg01no095_b05.g1 CHROMAT_FILE:
MSMg01no095_b05.g1 PHD_FILE: MSMg01no095_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:59 2005
         (290 letters)



>mm_chrX_60503968_60504656
          Length = 689

 Score =  553 bits (286), Expect = e-162
 Identities = 289/290 (99%), Gaps = 1/290 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtttcacttccatactctacaaaattggaatgaaagatcacttaactaattgtcaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 cagtttcacttccatactctacaaaattggaatgaaagatcacttaactaattgtcaagt 430

                                                                       
Query: 61  aattagtggagtacttattgcccaaaaaagatgatcaattcaacattaccatagttcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 aattagtggagtacttattgcccaaaaaagatgatcaattcaacattaccatagttcttt 370

                                                                       
Query: 121 tcttctcttttataaaaaaaataaaatctatgcacttgaatttccttaatttttaatgtg 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tcttctcttttat-aaaaaaataaaatctatgcacttgaatttccttaatttttaatgtg 311

                                                                       
Query: 181 ttcaatgatcaaaataaaagttccttcacagaattgacaaagaaaaaggcatatatttta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ttcaatgatcaaaataaaagttccttcacagaattgacaaagaaaaaggcatatatttta 251

                                                             
Query: 241 aaaacaaatatttaagtttccattactgagtattgatagtgactatatga 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 aaaacaaatatttaagtttccattactgagtattgatagtgactatatga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 689
Length adjustment: 9
Effective length of query: 281
Effective length of database: 680
Effective search space:   191080
Effective search space used:   191080
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)