BAC Information

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BAC

Clone NameMSMg01-095D04
ChromosomeX (Build37)
Map Location 34,667,965 - 34,668,441
singlet/doubletsinglet
Overlap gene2610020O08Rik
Upstream geneIl13ra1, Zcchc12, LOC547166, Lonrf3, EG621901, Pgrmc1, B230333C21Rik, LOC621983, Slc25a43, Slc25a5, C330007P06Rik, Ube2a, Nkrf, Sept6, Ankrd58, Rpl39, Upf3b
Downstream geneAkap14, Ndufa1, Rnf113a1, Gm9, Rhox1, Rhox2, Rhox3, Rhox4a, LOC100039913, Rhox4b, LOC100039948, Rhox4c, EG434760, LOC546295, Rhox4d, LOC100040016, Rhox4e, LOC100040043, LOC621852, Rhox4h, LOC546294, EG621903, EG434766, Rhox4g, EG434758, LOC622301, EG622311, Rhox6, Rhox7, Rhox8, LOC436198, Rhox9, LOC100039620, 4930525M21Rik, 4930430D24Rik, Rhox10, Rhox11, Rhox12, 1700123J19Rik, Zbtb33, 6430550H21Rik, EG665331
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095D04.T7 (MSMg01no095_d04.b1)MSMg01-095D04.TJ (MSMg01no095_d04.g1)
ACCAG312169AG312170
length711716
length of high quality
(start - end)		555 (44 - 598)477 (75 - 551)
definitionCHROMAT_FILE: MSMg01no095_d04.b1 PHD_FILE: MSMg01no095_d04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:08 2005CHROMAT_FILE: MSMg01no095_d04.g1 PHD_FILE: MSMg01no095_d04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAATTGTGTTAAGGCCCGGGAGCCTATTACATTCCCCACTGGTCTTAG
TAAATGAGTCAAATCATGAACTCAACCTAAAGAGGTGTGGTAGGTACTAA
GAACCATTAATTTGACTGAATTATTCCTTTGTTGTACATAATTGGCCATG
GGATTTAAGATAAAGGACCCCAACATACTCCAATTAGAATGAGAATTAAA
GGTCCAGTCAGTGCTGATAGCAGAGCAGTTAGCCAGGGGACCAAGAGAAA
TGGTACCAATTATCTGATTCATGCCTTTGTACCAATATCTTTCAGAGGTG
TTCCCCAAATATGGCAAGTTTTTTTTTCCAATTACTCCTGCTCAATTAGC
ATAGAAACATAGAGTTTCTCCCAAACCATCATTTGTGTCCTAAGAAATAA
GTCTAAGCCCCTGATATTGTGGGACCACTTCTGCAAGAGATCTAACTGTT
ATTCTCATTGAGAATTAGAAACTTTTGGTACCTCTAGGTCCTGATCAACC
TGTCTACTTTGTTCCTTAAAATTGTTATGCCTCAGGATGAAAGCTGATGG
CCCCTGTGGCTATTGAGTTGGCTATGCCACGCCAGCCAAGAGTGGAATGA
AGACAGGGCTACCTATCGTTTTCTTTGCCGCCTTGTCTCTTAATTAATAC
ATATTCTTTCA

CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTAGTTTAAAAAGACTCACAAATCTT
TAGTAGCAACAACTGTGAGACTCTTGAGGCAAGTCAGAACACTCATTCTC
ATCGACGTAGCAAATTTACGGCCGCCTTGGTCTACATGAGGCCATGCCTC
AAGACATATTTAAATTCAAAAGCTGGGCATGCATGATGTCTCACTCCTGT
AATCCTAGCGTTCAGGAAGCCGAGGTAGGACTGTCACAAGTAATTCGAGG
CCAGCCTGTACTACAGAGTTAATTCAAGGTAGGCCTGAGGTAGAGTGATA
TCCTGAGAGAGGCTCATGTTGCTGCATTAGTCATAGTATCTGATATGTAT
GAAGTTTATTATGCTTGTTAAAAATTAGGTCTTAGGCCCTGTACCATGTG
TTTCAAAATGGTAAAATTTCAAGTATTACAGGCATCGAGGGGCAAGTTAA
CTTTCCAACAGTTGAGAGATGCTTCATGTTTTTTTTTCCTCCCCCAGCAG
GTGAAGAAATACAGTATAAGAAAAAAAAAGGCCAAGTTTCCGCATTGTCC
TGCCTGACTGTGAAAGGTCTTATTGCTCAATTTTCATCTCATTTTTACCC
CTCTTTGTCCTTCTCCACTTTTCCCTTTTCTTTCTATCCATTCTCTGTCA
TTTTTGCCCCCCGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_d04.g1 MSMg01no095_d04.g1 CHROMAT_FILE:
MSMg01no095_d04.g1 PHD_FILE: MSMg01no095_d04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:08 2005
         (477 letters)



>mm_chrX_34667765_34668641
          Length = 877

 Score =  922 bits (477), Expect = 0.0
 Identities = 477/477 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttagtttaaaaagactcacaaatctttagtagcaacaactgtgagactcttgaggcaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttagtttaaaaagactcacaaatctttagtagcaacaactgtgagactcttgaggcaagt 260

                                                                       
Query: 61  cagaacactcattctcatcgacgtagcaaatttacggccgccttggtctacatgaggcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagaacactcattctcatcgacgtagcaaatttacggccgccttggtctacatgaggcca 320

                                                                       
Query: 121 tgcctcaagacatatttaaattcaaaagctgggcatgcatgatgtctcactcctgtaatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcctcaagacatatttaaattcaaaagctgggcatgcatgatgtctcactcctgtaatc 380

                                                                       
Query: 181 ctagcgttcaggaagccgaggtaggactgtcacaagtaattcgaggccagcctgtactac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctagcgttcaggaagccgaggtaggactgtcacaagtaattcgaggccagcctgtactac 440

                                                                       
Query: 241 agagttaattcaaggtaggcctgaggtagagtgatatcctgagagaggctcatgttgctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agagttaattcaaggtaggcctgaggtagagtgatatcctgagagaggctcatgttgctg 500

                                                                       
Query: 301 cattagtcatagtatctgatatgtatgaagtttattatgcttgttaaaaattaggtctta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cattagtcatagtatctgatatgtatgaagtttattatgcttgttaaaaattaggtctta 560

                                                                       
Query: 361 ggccctgtaccatgtgtttcaaaatggtaaaatttcaagtattacaggcatcgaggggca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggccctgtaccatgtgtttcaaaatggtaaaatttcaagtattacaggcatcgaggggca 620

                                                                    
Query: 421 agttaactttccaacagttgagagatgcttcatgtttttttttcctcccccagcagg 477
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agttaactttccaacagttgagagatgcttcatgtttttttttcctcccccagcagg 677


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space:   404889
Effective search space used:   404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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