BAC Information

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BAC

Clone NameMSMg01-096G07
ChromosomeX (Build37)
Map Location 119,856,891 - 119,857,133
singlet/doubletsinglet
Overlap genenone
Upstream geneEG245575, LOC100039544, Nap1l3
Downstream gene3110007F17Rik, LOC100039751, LOC100039763, LOC665281, EG625591, LOC665325
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096G07.T7 (MSMg01no096_g07.b1)MSMg01-096G07.TJ (MSMg01no096_g07.g1)
ACCAG313080AG313081
length704718
length of high quality
(start - end)
448 (76 - 523)248 (73 - 320)
definitionCHROMAT_FILE: MSMg01no096_g07.b1 PHD_FILE: MSMg01no096_g07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:43 2005CHROMAT_FILE: MSMg01no096_g07.g1 PHD_FILE: MSMg01no096_g07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAAAGCGCG
GAATTCTCCATGCCATACCTGCCCAAGCATGCCCAGGACATTAGGATCAC
TGGTGAGTAGGACACAACATCTGTTCCAAACCAACTGTGACAGGCCTGTG
ACATCAGGATCAAGGACATAGGAGCCCTGCCTGACCAGCGGCTCAGCTTC
CTTCTGATCAGTGCTGATATACCTTTGTTTGAGCACACTATACAGCCCCA
TGGTCCCCAGAGGAGACACCACTTCCAGGCACTGCAACACACCCAGGATC
TTAGGATTTCAGGATAGCAGGATTATTTGAGCTTAGTCACACCAGGTTCT
CAGAGTCTCAGAGGAAGCTTGACTACCAAGAACTCTGATACACCCAGAAT
CTCAGGTTCATAGGATCCTGGAGTCACAGGATCACAGAGAAAGCTAGAAT
CTGAGGAGTCCTAAATCAACTGGGATTATAGCAAGGACAGTCTCCAATCA
CATATAATGAGGGCAGCAAGCACTTGAGATAATCAGATGGCAGGAGGCAA
GTATAAGAAGAGAAGAAAAGAAACCACGGTTACTTGGCAACATCAGAACC
AAATTCTCCCACCATAGTAAGTCCTGAATACACCATCCCATCCAAAAAGC
AAGACCTGGATCTAAAATCACTTATCATGACGCTGATGCAGGACGTTAAC
AAGG
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGACTATCTCATTATTTTTTATTATTAT
TATTTTCATTGTTTAGAATTGTGAGATAAAGAAATTGTCAAAATTGACTC
TTTTCTTATATTCTTGTTCTCTTTTTGATAGGCTTTATGCATATACTAGG
ATAGACATATCCTCTAAATTGCATTTTGCCAATTCCCCAAAAATTTCATT
GTCTTCTTTTAATTAATGTAGGTTGTGAGTTTTCATCATTTCAGATTTTA
TTTTCCATTACTATTTAGTATATATATTATGTTCAGTATAAGGCATAATT
TTTTATGAGAATCCTCATATTAACTTGAAATATAAGACATGGACTTTATT
TGTTTGTCTAATAGTTAGAGGAGCATTTGCTAGAAATTTATTTATAATTT
ATTTGAGCTAAGAGAATTACTACTTATGATACGACAATTACGCAAACTTC
TGTATTACACGCTGAACATAATAACGTTATCTACTATGGCGAATATCCTC
AGCCAGTATATAACTATGATAACTAACTGTTATCATATAATATGTGTATA
TTCCTATGAGATCCCTCTTATACCCATCCATGTATTATATAGTTCTCTAA
CACCACTCCTCTATACATTGATTTAGCTTATTTTATTTTTTCACTGTCTT
ACTTCTCATGTTTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_g07.g1 MSMg01no096_g07.g1 CHROMAT_FILE:
MSMg01no096_g07.g1 PHD_FILE: MSMg01no096_g07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:43 2005
         (248 letters)



>mm_chrX_119856704_119857351
          Length = 648

 Score =  410 bits (212), Expect = e-119
 Identities = 237/250 (94%), Gaps = 9/250 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgactatctcattattttttattattattattttcattgtttagaattgtgagataaaga 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tgactatctcattatttattattattattattttcattgtttagaattgtgagataaaga 371

                                                                       
Query: 61  aattgtcaaaattgactcttttcttatattcttgttctctttttgataggctttatgcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aattgtcaaaattgactcttttcttatattcttgttctctttttgataggctttatgcat 311

                                                                       
Query: 121 atactaggatagacatatcctctaaattgcattttgccaattccccaaaaatttcattgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 atactaggatagacatatcctctaaattgcattttgccaattccccaaaaatttcattgt 251

                                                                       
Query: 181 cttcttttaattaatg--taggttgtgagttttcatcatttcagattttattttccatta 238
           ||||||||||||||||  ||       |  ||| ||||||||||||||||||||||||||
Sbjct: 250 cttcttttaattaatgatta-------aaatttaatcatttcagattttattttccatta 198

                     
Query: 239 ctatttagta 248
           ||||||||||
Sbjct: 197 ctatttagta 188


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)