BAC Information

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BAC

Clone NameMSMg01-097A10
ChromosomeX (Build37)
Map Location 50,402,890 - 50,403,102
singlet/doubletsinglet
Overlap genenone
Upstream geneGpc4, Gpc3, Kis2, LOC100041925, LOC665929, 6330534C20Rik, LOC624936, LOC546298, LOC100040569, Phf6, Hprt1
Downstream geneC430049B03Rik, Plac1, 4632404H22Rik, 4930432H15Rik, LOC385527, Mospd1, LOC100040609, Etd, Cxx1c, LOC100040644, Cxx1a, Cxx1b, AW822252, 4930502E18Rik, 1700013H16Rik, EG547172, Zfp36l3, Xlr, LOC100040719, LOC100040730, LOC100040260, LOC100040271, LOC100040765, LOC194788
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097A10.T7 (MSMg01no097_a10.b1)MSMg01-097A10.TJ (MSMg01no097_a10.g1)
ACCAG313562AG313563
length804799
length of high quality
(start - end)
60 (225 - 284)213 (129 - 341)
definitionCHROMAT_FILE: MSMg01no097_a10.b1 PHD_FILE: MSMg01no097_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:36 2005CHROMAT_FILE: MSMg01no097_a10.g1 PHD_FILE: MSMg01no097_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNNNCCCCCCNNNNNNNNCTCCNNNNCTTTCCCCNNC
AATCTTATACXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGGACCGCG
GAATTCTCCCAACTTCCCCACCATCTTGCTATATGGATACAGGCCTCTAG
AAAGATCCAATCTCAGACTCTCTTGTTGCTTTCTCCTTGTAAGCCTCCAG
TAAGACTCCTATCTCAAGGCTCTCATCTTGCTCTATCCCTGCAATCCTCT
AGGAACTCTCCTATCTCAGTCTCACCTTTGCTGCATCCCTGCAAGCCTCT
AGGAAGTCTCTTATCTCAGACTCTCTTCGTGCTCTATCCCTGCAAGCCTG
CACGAACCCTCCTACCTCATTTCTTTCATCCTGCTCTATCCTGCAAGCCT
ACCGGAACTCTCCTATATCATTCTCCCACCTTGCTCTATCCCTGAAGACC
TCCAGGAAGCCCTCCCATGTTAAGTTCCACATCTTGGTCTATTCCCGCAA
TCCTATATTGGTTTCTTGCCTCATTCTCCCCACATGCTCTATTCCTGTAA
TGCCTCCACGAATTGCCCCTATCCTAGTCACCCCCCATTCCATTTATAAC
TCCCCCGCGCTCCCTTCTGATCTTGCATCTTCGGTTTCCCCATCCCCGCC
CGCATCCCCTTAACGTTTCCTACCCTGCTTTCCTCGCTTCGAGGCTTCTT
ATTCTCGCTCTAATTCCCTGCTCCCCCTCTTTTTACCCCCTATGACGCGC
CCTCAACACCCCCAACTCGCAATTTTGGGTCGTATCCTGCCTAGCCCTCC
CCGC
ATTAACTACTTTTTTATANGGATCCTATATCAACACACCCGCCACAAGCG
NNNTGCTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCTCTAGAATACACTTTAAAGCTTTGATCCTTTCTA
TAGACTCAAGTAAATTAAGGGAGCAACCATGAACTAACCATAGAGATTAA
TTTAGTGGCATCCTCAAAAGAACGTTTTTAGTCATTGTGAATAATCATAA
AAACTACCTAGAAACTTAGAAACATTCTTAAGATAACAAGCTTTTAAAAA
TCAAGGCCACAGAATTACACTAACTCTGGTGGCTGAAAGTAGAGTATAAA
CTGGAAAGAAACTGCAAAACAAAGATACTTTTTAAAAACAGAATTTGTAG
TAGGTTGGTTAGCTGCTTATTTGTTTTGCTTTTTTTTCCCCATCTTCACA
GTTTTGCTGTTTCTTTGCCTCGTTGTGATTTGATTCGTGTTCCTTTGTGA
AACGCTACTCGTTAAAAGGCCTTTAAGTCGCCTGGGAGATCCAGAAATTT
GAGGTTACTCCCGCAGCGGATCTCCGACGGCCTCCGGGGATCATCATGCC
CCCGAGATACCATTTGTGCCCTTGTTTCAGACTGATAACTGATAAGGCTT
GGCAATCCCCCCCTCTTTTCTACGAAGTGGCTGGGCCCGAGCCTTTACAA
GATATGATATGTTAAGGAAACGGCCTGCATCTCTATGCTATGCATGAAGG
GGTCTTCGTCTTGGGATTGCACATAACTTTATGAACCTGTATTCTGTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_a10.g1 MSMg01no097_a10.g1 CHROMAT_FILE:
MSMg01no097_a10.g1 PHD_FILE: MSMg01no097_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:37 2005
         (213 letters)



>mm_chrX_50402690_50403302
          Length = 613

 Score =  397 bits (205), Expect = e-115
 Identities = 211/213 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttaaagctttgatcctttctatagactcaagtaaattaagggagcaaccatgaactaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 413 tttaaagctttgatcctttctatagactcaagtaaattaagggagcaaatatgaactaac 354

                                                                       
Query: 61  catagagattaatttagtggcatcctcaaaagaacgtttttagtcattgtgaataatcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 catagagattaatttagtggcatcctcaaaagaacgtttttagtcattgtgaataatcat 294

                                                                       
Query: 121 aaaaactacctagaaacttagaaacattcttaagataacaagcttttaaaaatcaaggcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 aaaaactacctagaaacttagaaacattcttaagataacaagcttttaaaaatcaaggcc 234

                                            
Query: 181 acagaattacactaactctggtggctgaaagta 213
           |||||||||||||||||||||||||||||||||
Sbjct: 233 acagaattacactaactctggtggctgaaagta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 613
Length adjustment: 9
Effective length of query: 204
Effective length of database: 604
Effective search space:   123216
Effective search space used:   123216
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)