BAC Information

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BAC

Clone NameMSMg01-097A11
ChromosomeX (Build37)
Map Location 63,796,709 - 63,796,993
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC671840
Downstream geneSlitrk2, LOC666824, LOC627734, EG666828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097A11.T7 (MSMg01no097_a11.b1)MSMg01-097A11.TJ (MSMg01no097_a11.g1)
ACCAG313564AG313565
length7001,219
length of high quality
(start - end)
283 (64 - 346)---
definitionCHROMAT_FILE: MSMg01no097_a11.b1 PHD_FILE: MSMg01no097_a11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:37 2005CHROMAT_FILE: MSMg01no097_a11.g1 PHD_FILE: MSMg01no097_a11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGATTCATTTCAAT
TCCATTATTTAAACAATTTGAGTTGTTTTTCTGCATTTTATAAGTTTTCT
ATTTTCTTCCAGAATTTCAATAACATTTTGATTGGGAATACAATTAATCT
GTGTAACATTTTTGAGTAGTATAGATATCTTACAATATTGATCATTCTAG
CCCATAAACATAGAACAATAAACATAGAAAATTATTTTTAGTAACTTTGA
CGGTGATTTGTAAATGGAATTATTATCAGTATTTAATTTTACTACTTCAT
TGATACTGTTTTATATTTTTGATACTGTGTGAATGCTACTGCATTTGANA
TTTACCCCNTTTCTGATCCCTTATTAGGTATTTATTTCATTTAAATTTCC
AATGCTATCCCAAAAGATAACAACACGCTCGCCTAGCCTCTCCTCCAACC
ATCCACTCCCACTTCTTGGCCCTGGCGTTCCCCTGTACTGAGGCCCATAA
AGTTGGCACTACCAACGGACTTCTCTTTTCACTGATGGCTGACTGCAGCT
AGAGACATGAGCTCCGGGCGGTACTGGTTACTTTCAAACGTTGTTTCCCC
CTTAGGGATGTATAACCCCCCCAGCTCCTTGGGTACTTTTTCTAGCTCCT
TCCTTGGGGGCACTGGGATCCATCCTATGCTGAACGGCGAGACCCCCCCC

TTTAAACCACTTCTTTTTTTTTCGTGTTCGCTTCTTTCGCTCTTCCCCCC
TTCGCTACCACGTTTCCTTCTCCGACACGCCTAGGGACCCAAAACGGTGC
GGGAAAGAAATGCTTCCCACAGATCGAGTTTCAGCGTACGTAGTGAGTAT
TTACCTCTTACTATCTCTATATGTCTGGGGATTTACCCCAGCTCCATTCA
TCGAGACCACCACCCACCCATTGTACAACGGGGAGGGAAAAGTATCGGAG
AAAGGTATGTAAGCCGCGGGAGGTTACAGTCTCTCTTCAACTTCGCGCGG
GCCTATATTTCACTGGAAATGTGGGGGCACCAAAAAAAGTGGGGGGGGAC
GGACAAAAAAAGGGGCAGAGTGGGGCTGGTGAAGACACACGATATGATAT
CTGCGCGGTGGGGGTGGGCCGCGCCATCTTGGTTTTATACGCGGCATACA
CACGTCTCCCCCACCACCGCCGGTGACAATATAACGCTTCCTCCCCTCTG
ACCGACCATTGTGCTCCTTATATGTGGCGCGTCGTTCCTGCGGGGGGTCG
GTGTCCCCCCATGGGGGGGGGTACCCGCCGGTAGCGGGCGATCTCTTTCA
GCGATTACGCTCCGCGTTGTCGCTCCACCGCTCGTTTATCCCCAGTGTCT
TCCCTGCGCCCCGCCCGTTTTTTATTTCAGACCCTCCAGCTTTTTTCATA
TCTTACTCGCCTCCCCTCTCGGCGGGTATATCATATCTCGGCCCGCTGTT
TTTATCACCGCGCTCCTCCGCCTATGGTATTTATACCATGGCGCCGCGGT
GGTGGTGCACCCGCACTCGCCGATATATAATATCAGATTGCTCCCGCGCC
CGCATCCCCGACAAGACACACACGCCACCGTGGAGACATTAGACCATTAA
GTAAAATAATCTGNTACGGTTTTCGCTGGCCGCGGCGGGCGCGAGTATAT
TGGCTGCGAACTCGCTCGATTTACTCTGCCGNCGNCCGATTAATTATCGC
GCCACCTACTTATCTCGGTGTGCACCGGCGATGTGCGGANACAATATGAG
TGTACATACACATATAATCAGGGGAGCGCATAACACACCCAACCGCGGTA
TTATGATTTCTCACTGGTGTCGATATCGGCGGCATAAATACACACCCTTA
TTATTGATTGATATAATTCGACGTGTCGCACTGCTATGTATATCACGGCG
CGAGAGTGAGTAACGAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_a11.b1 MSMg01no097_a11.b1 CHROMAT_FILE:
MSMg01no097_a11.b1 PHD_FILE: MSMg01no097_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:37 2005
         (283 letters)



>mm_chrX_63796359_63797043
          Length = 685

 Score =  501 bits (259), Expect = e-146
 Identities = 278/285 (97%), Gaps = 2/285 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caatttgagttgtttttctgcattttataagttttctattttcttccagaatttcaataa 60
           ||||||||||||||||||||||| |||||||||||||||||||||  |||||||||| ||
Sbjct: 635 caatttgagttgtttttctgcatcttataagttttctattttcttgaagaatttcaaaaa 576

                                                                       
Query: 61  cattttgattgggaatacaattaatctgtgtaacatttttgagtagtatagatatcttac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cattttgattgggaatacaattaatctgtgtaacatttttgagtagtatagatatcttac 516

                                                                       
Query: 121 aatattgatcattctagcccataaacatagaacaataaacatagaaaattatttttagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 aatattgatcattctagcccataaacatagaacaataaacatagaaaattatttttagta 456

                                                                       
Query: 181 actttgacggtgatttgtaaatggaattattatcagtatttaattttactacttcattga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 actttgacggtgatttgtaaatggaattattatcagtatttaattttactacttcattga 396

                                                        
Query: 241 tactgtttta--tatttttgatactgtgtgaatgctactgcattt 283
           |||||||| |  |||||||||||||||||||||||||||||||||
Sbjct: 395 tactgtttgaaatatttttgatactgtgtgaatgctactgcattt 351


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 685
Length adjustment: 9
Effective length of query: 274
Effective length of database: 676
Effective search space:   185224
Effective search space used:   185224
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)