BAC Information

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BAC

Clone NameMSMg01-097P01
ChromosomeX (Build37)
Map Location 120,130,577 - 120,130,681
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039544, Nap1l3
Downstream gene3110007F17Rik, LOC100039751, LOC100039763, LOC665281, EG625591, LOC665325, EG382265, LOC665364, EG546368
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097P01.T7 (MSMg01no097_p01.b1)MSMg01-097P01.TJ (MSMg01no097_p01.g1)
ACCAG314246AG314247
length695975
length of high quality
(start - end)
630 (66 - 695)---
definitionCHROMAT_FILE: MSMg01no097_p01.b1 PHD_FILE: MSMg01no097_p01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:52 2005CHROMAT_FILE: MSMg01no097_p01.g1 PHD_FILE: MSMg01no097_p01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGAATCCATGCAGGGACATCCCATAGCTGCCCAGGGAGTTGAAGAAA
TTTTCCCATGTAGCCCGGAGACTCTAGGTTACAAAGAAAGTGATAAGCAG
GAACAAGGACATTTCCAGTCTGTTCAAGTACTTCTGGGAATTTTTGACCT
GCAGAAGGAAGGTTAGGATCTTTTTCATCTGCACAAAGGGTTCTGGGAAC
TTCTCTATCTGCCTAAGGGTCTCTGTACACACCCAAACAAGAACCTATAG
GTACTCTGTCTTCTCTACCAAATTCGTTCAAACATCCATCTAATTACTAG
AGGGCTCTCACATTTTCTCCATCTGCTCAACTTACAATGCTCATCATGTT
AGCCACAGACTAATGAATATGTTCTCTCTAGCCAGGAAAATCAGGAGAAG
TTTTTGTATTTCCCAAGTTATCCAGAACACTACCTATCTGCACCAGGTGG
TCAGGGATATCCACTATCTATCACTGTAAATGTAGAACATTTGCTAACTT
CTTAAGGGTAAAAGAAAAATTGCACAGTTGCAATTGGAAATTTGCATGTG
CAAAGTTCTGTGTCATCCATCCAAAGGTATCCAGAACCTTCGACTGATTC
AACAGGTATATTGGGATTGGGACAATGTAAACACAAAGAGACTAC
TTATACTTCCCATTTCTTTNTATCACTTTTTTTTTTTATATTCCCCCCCT
AAATTACTAATTAATATTTATATATAGGTTAGTAAAACACTTATCCACAA
GCAAGGANNCATTAATATATCTAACCCGCCTACCCCTTCGCCTTATTTTT
TGGAGAGGGATTGCAGGTTTGGTGGGCCGCTTGCGGGAGGGGGTAGTGTT
ATTGTGTGCGGGTGCGGTGTTTCACCTGCCACCCTGTGGGGGGAGAGTTA
CCGTCGCATGTGGGTGGATCGAAATGATCGCGGATTACACAGGAGGTAAG
GTGGAATATCCTAGGGTCATGCCCGTTCCGGCGGCCTTGTAGCGGGGGAG
ATGGCGGGACCCGGTGGAAAGTGGGGGAGTGGCGCGCCCTTACGGAGGTG
GCCGCCGTTGGTCGGCGCCGTAGCGTCCGTACGCCGGACGGGAAAGAACG
GTGCCCGGATGAGCGGGGGCGGCGTTCGGGGGGTTTTGGGATTAGGGGTG
GGGTGGTTCTGATGCGCGGTTGGCTGGAGGCGCATATATATAGCGCAATT
GTGGGTTTCGGGGCCCCTTGAGTGAGGACCAGCGATGGGCGCATCTACCA
CGCGGTAGGGAGCAGGTGGTGCGTGACGGGGGGGGTTGCACTACCGGCAT
TAGGTTTGGTCTGACGGGAGGGTCAACGATTTATGCGAAAGAGGAGGCGA
GCTCCCCCTGTCTATCCGATAAAGTGGTTGCTCCCCGGCGAGTGGCCTCG
CGGTTAGCGCTTACCCCACTTTCTTTTCGAAGAGTACGCCCGCGGGAGAG
AGTGGTTTGGCGGTTTTAGCGCCATCGTAAGGCGGGGCGGCGCACGTCGG
CCGGTTACATTCACACCGGAGCACCCGTTATAGGTAGGGCGGGGTATAAA
CCTTGTTTTGCGGCGNGCCTTCTATGTTACTTTGTCCGCGGGCTTGCTGC
GTGTGTNTATTTATATGCCGGTGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_p01.b1 MSMg01no097_p01.b1 CHROMAT_FILE:
MSMg01no097_p01.b1 PHD_FILE: MSMg01no097_p01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:52 2005
         (630 letters)



>mm_chrX_120129852_120130881
          Length = 1030

 Score =  114 bits (59), Expect = 2e-29
 Identities = 95/107 (88%), Gaps = 4/107 (3%)
 Strand = Plus / Minus

                                                                       
Query: 526 tttgcatgtgcaaagttctgtgtcatccatc-caaaggtatccagaaccttcgactgatt 584
           ||||||||||||||||||| |||| |||| | |||||| ||| |||||||||| | ||||
Sbjct: 830 tttgcatgtgcaaagttctttgtcctcca-cacaaaggaatctagaaccttcggcagatt 772

                                                          
Query: 585 caacaggtatattggg-attgggacaatgtaaacacaaagagactac 630
           | ||||| |||||||| | ||||||||||||||||||||||||||||
Sbjct: 771 ccacagggatattgggca-tgggacaatgtaaacacaaagagactac 726


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space:   632400
Effective search space used:   632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)