BAC Information

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BAC

Clone NameMSMg01-098B14
ChromosomeX (Build37)
Map Location 7,420,084 - 7,420,583
singlet/doubletsinglet
Overlap geneOtud5
Upstream geneDgkk, Ccnb3, Akap4, Clcn5, Usp27x, 2010204K13Rik, LOC668973, Ppp1r3f, 4930524L23Rik, Foxp3, Ccdc22, Cacna1f, Syp, LOC632264, Lmo6, Plp2, Pdzx, Ppia-psx_14.1, Gpkow, LOC100043938, Wdr45, Praf2, Ccdc120, EG236622, Tcfe3, Gripap1, LOC100043939, Kcnd1
Downstream genePim2, Slc35a2, Pqbp1, Timm17b, Pcsk1n, Eras, Hdac6, LOC668974, Gata1, Glod5, LOC668975, EG627737, EG632013, Suv39h1, Was, EG627782, Wdr13, Rbm3, Tbc1d25, Ebp, Porcn, Ftsj1, Slc38a5, Ssxb10, Ssxb9, Ssxb1, Ssxb2, LOC546263, Ssxb6, Ssxb3, EG627853, EG627857, LOC668977, LOC631002, Ssx9, Ssxb5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098B14.T7 (MSMg01no098_b14.b1)MSMg01-098B14.TJ (MSMg01no098_b14.g1)
ACCAG314365AG314366
length790686
length of high quality
(start - end)
115 (43 - 157)500 (48 - 547)
definitionCHROMAT_FILE: MSMg01no098_b14.b1 PHD_FILE: MSMg01no098_b14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:05 2005CHROMAT_FILE: MSMg01no098_b14.g1 PHD_FILE: MSMg01no098_b14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTACCTATCGAGAGAGGATCCGCGGAATTCCAGGATGTCCACTACCACAT
CCAGTTGCCTTTCGGTTTGCGAGACTTAAGTTGTTGGGGTTTTGTTTTGT
TTTGTTGGGTTTTTTGTTTGTTTTTTTTCGAGACAGGGTTTCTCTGTATA
GCCCTGGCTGACCTCCACTTCACTCCGCACATCAATCTGCTCATCTACCT
CACAAATTTATCTCGTTTTTCGTTTCTCCCCCTTCCCTCCATTTTTTCCC
TTTTTCCCCCTCCCCTTTCCCCTCGCCTTTCCCCCACCTCCACCCCCACC
CCTTTCACTTTCACTACTTTCTCATCCCCACCCCCCCCCCTTTCCACCTT
TATCCCCCTATTTCCCTATTCTCTCCCACTTCCCACATATCCATTTCACC
TTATATATTTTCATCTTCATCATACCCATACTCTCTTCTTTTCACTATCT
TATCCCTCCCCCCCCTTTCCCCATATTTTCCCTCTAACTCTTTTCTTTAT
TTATACACATATAACCTACAAATTATAAACATACCCATACCCCCCATTTA
TTCTCTCTTTTACCACCCCCCATTCACTCCCACCCCACACTTACTCTATA
TATTACTATCTTCCCCCACTCACCCACATATTTATTTTCTTTTCCCCCTC
CTTCTCTTCTTCCATCTTTCTTATTCACCCCTCTCCTCATATTTTATTTT
CCTTTCCCTCATCTATCTCATTTTTCCATTACCATCTCTTTTAATAACTT
CCCTTTCCTCCACCCCACTAACACTTACTTTATTCCCTTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCC
AGGAGTCGCAGATACGATGGAGCCCTTCCTTAGAGGAAGCTCTCAGGCCT
CTCTAAGGGACTTTGGTTCAGTAACTTTTTCCTTTAGGACAAGTGTGAGA
TTCCCTCCCGCAAAGAACTCAAATTAAGGTGGTGTCCTCAGAGAAATAGT
CTAAGCATACCCAAGAAACTTAAACCCTTGATGTAGGAAGGACCTCTCTC
TTTTGCTGAGTCTGCTCACCAGCCATGTGGCCTCCTCAGGAGTCCTAAGC
CTGTATTTGGGGACCTAGACTTGCTTGTAGAATTGAAGGTTTAGAGTATA
CCCACACACCTTTTAGATAGTGATTTCCAAAGTATCCCTCCAGTGTTGTG
AAACGTCTTTCTGGAAGATAAAATTCTCAGTGGCTTAGGGACAAAGGCCA
AAACCAGTACCTAGAAGCAGAACTGTGGCTCACAGTCGGTGTTGACGTAC
AGACCTCTTTGCTTATGGCCCGGGGTTTAATTACAGATGTTCCAGGCAAG
AGGACTTCTTCAGAACACAGTTTCAGTCATGGGCTGGTGTCTATGCTCGT
GTGCGTGTGTGTGTGTGTGTGTGTGCTCATATATTTCCGTAAGGATGGAT
ACATATATATACATATTAATATGCGCGTGTGGGCGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_b14.g1 MSMg01no098_b14.g1 CHROMAT_FILE:
MSMg01no098_b14.g1 PHD_FILE: MSMg01no098_b14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:05 2005
         (500 letters)



>mm_chrX_7419884_7420783
          Length = 900

 Score =  951 bits (492), Expect = 0.0
 Identities = 498/500 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccaggagtcgcagatacgatggagcccttccttagaggaagctctcaggcctctctaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cccaggagtcgcagatacgatggagcccttccttagaggaagctctcaggcctctctaag 260

                                                                       
Query: 61  ggactttggttcagtaactttttcctttaggacaagtgtgagattccctcccgcaaagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggactttggttcagtaactttttcctttaggacaagtgtgagattccctcccgcaaagaa 320

                                                                       
Query: 121 ctcaaattaaggtggtgtcctcagagaaatagtctaagcatacccaagaaacttaaaccc 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcgaattaaggtggtgtcctcagagaaatagtctaagcatacccaagaaacttaaaccc 380

                                                                       
Query: 181 ttgatgtaggaaggacctctctcttttgctgagtctgctcaccagccatgtggcctcctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgatgtaggaaggacctctctcttttgctgagtctgctcaccagccatgtggcctcctc 440

                                                                       
Query: 241 aggagtcctaagcctgtatttggggacctagacttgcttgtagaattgaaggtttagagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggagtcctaagcctgtatttggggacctagacttgcttgtagaattgaaggtttagagt 500

                                                                       
Query: 301 atacccacacaccttttagatagtgatttccaaagtatccctccagtgttgtgaaacgtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atacccacacaccttttagatagtgatttccaaagtatccctccagtgttgtgaaacgtc 560

                                                                       
Query: 361 tttctggaagataaaattctcagtggcttagggacaaaggccaaaaccagtacctagaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttctggaagataaaattctcagtggcttagggacaaaggccaaaaccagtacctagaag 620

                                                                       
Query: 421 cagaactgtggctcacagtcggtgttgacgtacagacctctttgcttatggcccggggtt 480
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 621 cagaactgtggctcacagtcggtgttgacgtaaagacctctttgcttatggcccggggtt 680

                               
Query: 481 taattacagatgttccaggc 500
           ||||||||||||||||||||
Sbjct: 681 taattacagatgttccaggc 700


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space:   436100
Effective search space used:   436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)