BAC Information

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BAC

Clone NameMSMg01-098J13
ChromosomeX (Build37)
Map Location 122,667,114 - 122,667,454
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665463, EG665522, LOC100038969, LOC100038978, EG665579, EG665611, EG626048
Downstream geneLOC100040410, LOC100039903, LOC665679, 4932411N23Rik, Gm381, LOC100040472, Gm382
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098J13.T7 (MSMg01no098_j13.b1)MSMg01-098J13.TJ (MSMg01no098_j13.g1)
ACCAG314735AG314736
length707740
length of high quality
(start - end)
595 (44 - 638)103 (75 - 177)
definitionCHROMAT_FILE: MSMg01no098_j13.b1 PHD_FILE: MSMg01no098_j13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:46 2005CHROMAT_FILE: MSMg01no098_j13.g1 PHD_FILE: MSMg01no098_j13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:46 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACTAAAACTCTGGGAATTTGGGGCACCTGTGAGGAATTTTTTTTCCT
GATTTGATTATGTGAAATAGGAAGACCAACCCCAAATGTAGATCGTTTGT
TCTGTTGTAGAAACAACTCTAAAATATAAATTTCATTGATGTCAGTTTTT
TAATAAAAGTGTGTAGCTAGGACTAAATTCTAGTAGTTACAATCAAGATA
GTTTTTATGATCCTACACTGTTTCTGTCTTTTATTACAGTGTTTCCTGAA
CACTGAGGTGGAGATTTGATGGTGACCTCCCTTGTAGGACTGAATGTTAG
AAGGTCCCTCAGGCTTTGCATATTATCTGGCTGGTAGATTAGAAAGGAGA
TGGTTACAAGCAAAATTGGATGGATGAGCTGTTAGGCATTCCAAAGAGCA
AATGGTGCTTGACTAACCTCGTAAGCTATCTCCCTCTATTCTCTGGGACT
GGTTGTTGCTAGTCTATTTCTGTTTGTCCTTATATATCAGATTGATATTT
CCCAAGTGTTGTTCCTCCATGCCCAGAACCCTTATTTTTAGTCTTATACC
TGAACAAGCTTCCTTTCATTTTCAGCTGATCTGCTCAGGTTTCAGTATTA
GAGAGCATCTCAGCAGAGCTTGCAGCTCTATAACCCTGCCACTCCCACTG
CTGCTGC
CAATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGGACAAAGAAATGGGAGTGAGTGG
GTAGGGGATCAGGGCAGGGGGAAGGGAGGGGAAAGGCTAAAGGTGACTGT
TATGATAGCATTTGAAATGTAAATGCAGAAAATAACTACTAATATTAAAA
ACAAATTAAAAAAACATAACTGTATTTACATATGTGCACAGGGATATGTG
GCTAACAACCACATAATATAAAATTATCATTCCTTTCCAGGACTGTCTTT
TTTGTTTGATTGCTTGTTTTTTGTTTTCCTTGTCTGTCCTGCATTGTTCG
ACCTCCATTATCAGCCCCCCCCCCGCTATCCCTCTTTTACCCCTCCATTT
CTATTTCCCCTGCTCTCCTTCTCATCCCACCTTTTTCCGTCGCACCCCTT
CCCCCCTCCTCCCCCCCCCCCCCTCCGCGCCCTGGTCCTCTTCCTCCTCC
CCCCTTCCAAACTTTACCCACATTTCCCCTCCCCCTCCCTTTATCTTCCC
ATTTTCGCCCCTATCCATCATATATTTCCCTTTTTCCCCCCCTTTTTTTC
TATATCTCCCCCCTCCCCCCCCACCTCCTATTATTCTCTATTCTCTCTAC
TTTCCCCCTCAATATTTCCCCCCCCCACCCCCCCCTATTCTCTCTATTAA
CACCCTTCCCTCTCCCCTTATATCCCCTCCTCCCCCCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_j13.b1 MSMg01no098_j13.b1 CHROMAT_FILE:
MSMg01no098_j13.b1 PHD_FILE: MSMg01no098_j13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:46 2005
         (595 letters)



>mm_chrX_122666915_122667909
          Length = 995

 Score =  495 bits (256), Expect = e-144
 Identities = 319/342 (93%), Gaps = 6/342 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactaaaactctgggaatttggggcacctgtgaggaa----ttttttttcctga 59
           ||||||||||| ||||||| ||| |||||||||||||||||||    |||||||||||||
Sbjct: 200 ggaattcactagaactctgagaaattggggcacctgtgaggaattttttttttttcctga 259

                                                                       
Query: 60  tttgattatgtgaaataggaagaccaaccccaaatgtagatcgtttgttctgttgtagaa 119
           ||||||||||||| |||||||| |||||||||||||||||||||||||| |||| |||||
Sbjct: 260 tttgattatgtgagataggaagtccaaccccaaatgtagatcgtttgttttgttatagaa 319

                                                                       
Query: 120 acaactctaaaatataaatttcattgatg-tcagttttttaataaaagtgtgtagctagg 178
           ||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 320 acaactctacaatataaatttcattgatgct-agttttttaataaaagtgtgtagctagg 378

                                                                       
Query: 179 actaaattctagtagttacaatcaagatagtttttatgatcctacactgtttctgtcttt 238
           ||||||||||||||||| |||||||||| |||||||||||| || |||||||||||||||
Sbjct: 379 actaaattctagtagtttcaatcaagatcgtttttatgatcttatactgtttctgtcttt 438

                                                                       
Query: 239 tattacagtgtttcctgaacactgaggtggagatttgatggtgacctcccttgtaggact 298
           |||||||||||| ||||| |||||||| ||||||||||||||||||||| |||| |||||
Sbjct: 439 tattacagtgttccctgagcactgagggggagatttgatggtgacctcctttgtgggact 498

                                                     
Query: 299 gaatgttagaaggtccctcaggctttgcatattatctggctg 340
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gaatgttagaaggtccctcaggctttgcatattatctggctg 540


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space:   576225
Effective search space used:   576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)