BAC Information

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BAC

Clone NameMSMg01-098M04
ChromosomeX (Build37)
Map Location 92,528,432 - 92,528,860
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC385495, LOC670263, LOC100042098, LOC631145, 0610008C08Rik, EG668148, Maged1, LOC668150, EG385499, EG668156, Gspt2, LOC385500, Zxdb, LOC631331, EG631319, Zxda, Gm371, 9630042H07Rik, Arhgef9, LOC619688, LOC100042189
Downstream gene2810002O09Rik, Asb12, LOC668202, AK129302, A130028J20Rik, 1700010D01Rik, Las1l, Msn, Psmb7-ps1, LOC668221, Vsig4, B230358A15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098M04.T7 (MSMg01no098_m04.b1)MSMg01-098M04.TJ (MSMg01no098_m04.g1)
ACCAG314859AG314860
length697683
length of high quality
(start - end)
499 (36 - 534)414 (55 - 468)
definitionCHROMAT_FILE: MSMg01no098_m04.b1 PHD_FILE: MSMg01no098_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:58 2005CHROMAT_FILE: MSMg01no098_m04.g1 PHD_FILE: MSMg01no098_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:58 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTGT
TCACCTCTATATTTTTTTAATAGGGTTATTTGGTTCTCTAGAGTCTAACT
TCTTGAGTTGTTTTTATATTTTTGGTAGTAGCCCTCTTTTGGATATAGAG
TAGGTAAAGATCTTTTACAATCTGTGCGTTTCCATTTTGTCCCATTGACA
ATGTCCTTTGCTTTTCATTAAAAAAAAATTTTTTTAGAGATGAAGGACAA
AATTTTTAATATCATTTGTCTGGCTGGGGCAAATGTCCAAGGAAAAGCCA
GCCTTGAACAGACGATTTCACAAACATATGCACACTTTAGGCTTATATTT
TTCTTATGTAGTATCATCCTTAAATGTCTTTTAGATCCTGACCCCAGGTT
ACACTTTTTTGGTTTTTTTTTTAATTTTGTTTTTTTAATTAGGTATTTAT
TTCATTTAAATTTCCAATGCTATCCCAGAAGTCCCCCACCTGCTCCCCCA
CCCACTCCCCCACCCATTCACTCCCACTTCTTGGCCCTGGAGTTCCCCTG
CACTGAGGCAGATAAAGTTTGTTCAACCAATGGGCTTCTCTTTCCACTGA
TGGTCCACTAAGCCATCTTCCGATACATATGCAGCTAGACACACAAGCTC
CCGGCGGTACTGGGTAGTTCCAATTGCTGCTCCACTAAAGGGTCGCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTTGCTTAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTT
CTGGAGTCCACCTTCTTGAGTTCCTTATATATATTGGATATTAGTCTCCT
ATCTAATTTAGGATAGATAAAGATCCTTTCCCAATCTGTTGGTGGCCTTT
TTGTCTTATTGACAGTGTCTTTTGCTTTATAGAAGCTTTGTAATTTTTTT
CTTTTTAAATATAATGTATTAGGTATTTTCCTCATTTACATTTCCTATGC
TATCCCAAAAGTCCCCCATACCCCCCACTCCTCTACCCACCCACTCCCAC
TTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAATTTACATGAC
CAATGGGCCTCTCTTTCCAGTGATGGCCGATTGGGCCATTTTTTTTTTCA
GCACTTGCCCATCTCATTTTGCAATGCTGATTGACTAAGGAGATATATAG
GTTTCTGTGATATTATAAATGATCATTGCGAAAGGCTGCTCCTGGGGATT
TATCCTAGTTGGTAGATCTCTCTCTTCCATCCCTTGCATTCTGCCGCTGA
TGCCCGCATCTATGGTTCCAGATTTCTTTCTTAGGGCTTCTATCTTCAGC
GTTGTCTCTCCTTGCGCTCTCCTTTATTGTGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_m04.b1 MSMg01no098_m04.b1 CHROMAT_FILE:
MSMg01no098_m04.b1 PHD_FILE: MSMg01no098_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:58 2005
         (499 letters)



>mm_chrX_92528231_92529129
          Length = 899

 Score =  748 bits (387), Expect = 0.0
 Identities = 419/431 (97%), Gaps = 5/431 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctgttcacctctatatttttttaatagggttatttggttctctagagtctaac 64
           |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattctctgtttagctctatatttttttaatagggttatttggttctctagagtctaac 261

                                                                       
Query: 65  ttcttgagttgtttttatatttttggtagtagccctcttttggatatagagtaggtaaag 124
           |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 262 ttcttgagttctttttatatttttggtagtagccctctattggatatagagtaggtaaag 321

                                                                       
Query: 125 atcttttacaatctgtgcgtttccattttgtcccattgacaatgtcctttgcttttca-- 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 322 atcttttacaatctgtgcgtttccattttgtcccattgacaatgtcctttgcttttcatt 381

                                                                       
Query: 183 -ttaaaaaaaaatttttttagagatgaaggacaaaatttttaatatcatttgtctggctg 241
            |||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 382 tttaaaaaaaattttttttagagacgaaggacacaatttttaatatcatttgtctggctg 441

                                                                       
Query: 242 gggcaaatgtccaaggaaaagccagccttgaacagacgatttcacaaacatatgcacact 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gggcaaatgtccaaggaaaagccagccttgaacagacgatttcacaaacatatgcacact 501

                                                                       
Query: 302 ttaggcttatatttttcttatgtagtatcatccttaaatgtcttttagatcctgacccca 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ttaggcttatatttttcttatgtagtatcatccttaaatgtcttttagatcctgacccca 561

                                                                       
Query: 362 ggttacacttttttggttttttttttaattttgtttttttaattaggtatttatttcatt 421
           ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 562 ggttacacttttttg-tttttttttta-ttttgtttttttaattaggtatttatttcatt 619

                      
Query: 422 taaatttccaa 432
           |||||||||||
Sbjct: 620 taaatttccaa 630


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space:   434721
Effective search space used:   434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)