BAC Information

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BAC

Clone NameMSMg01-099K20
ChromosomeX (Build37)
Map Location 158,809,486 - 158,809,587
singlet/doubletsinglet
Overlap genenone
Upstream genePrkaca-ps1, Rai2, Gm47, Nhs
Downstream geneReps2, LOC654358, LOC100041557, LOC667630, Rbbp7, 4932441K18Rik, LOC671250, Syap1, LOC100041607, Ctps2, S100g, LOC100040610
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099K20.T7 (MSMg01no099_k20.b1)MSMg01-099K20.TJ (MSMg01no099_k20.g1)
ACCAG315558AG315559
length714861
length of high quality
(start - end)
102 (69 - 170)86 (145 - 230)
definitionCHROMAT_FILE: MSMg01no099_k20.b1 PHD_FILE: MSMg01no099_k20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:16 2005CHROMAT_FILE: MSMg01no099_k20.g1 PHD_FILE: MSMg01no099_k20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAA
TTCTACAATTATTCCACACACTGCTGCACCTAGCTTTACATGAGTTCTGG
GGCTTTGAACTCAAGTCCTCACCTTTGTACAGCAAGTGCTTTTATCTACT
GAGTTATTATAATTAGTGTTAACCATCAGCTTTATGCACTCTATAATCAC
CTGCGAAGGGAGCCTAATTAACTGATTATCTAGATCAATGATTCTCAACC
TGTGGGTCATGACCCCTTTGGGGCTGAATTACCCTTTCACAGGGCTCACC
TAATAACATCATAAATATCAGACATTTCCATTATGATTCATAACAGTTAT
GAATGATCTTATGATAACAATCCCATGGTTGTGGGGGTCATCACAACATG
AAAAGCTGCATTAAAGGCTCACCACATTATTAAGGCTGACAACCACTGGC
CTGTATCAATGTTCCGTGAGTATCCCTATGATGAATTAATTCTTGATCTT
CTTAATTGATCTGATCACACCCAGTAAGTGACCCCACTCCCTGAGCTTGT
TTACTGAGTCTAACGCCTTGATTTTACAATCCTCCATGCATCTATTTTCC
CTCCCTTCTTACATATTATTGCCCACGTGACTACCCATTTTCCCCCTTTT
ACTCTCCTGCTATTTTCTGCTCTTCCTTGCCCTTTTCTACAACCTTCTCT
CTACTAATTCTCCA
CCTCTTCCTCTTTTTTCCTTCCTTTTTTTCCCTCTCTTTTTCTCTTTCCC
CCTTCTTCCCTTNCTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCAGTTAA
AACACCTTCTGGGTTTTTTGTTGGTTTATTTTGTTTTGAAGCATGACTTT
CCTGGTGTTCATGTTTGCTGGATCCCTGGTCATGACAAGAGATATCGGAT
ATGTCATTGTTTCTGGAAAGCATCTCCCAGGCCCTTCCGGTCACTGTGAG
ATACTTTTCCTAGAGAGCCCGTTTGACCCATTATTCATTGAATGACCTGT
ACTTTTTATCTATATCTAGTTTTTGAAAGTGGTATCTTTATCTTTCTTTG
CCACTCTTTATACATAATCTTGTTTTATTGCAAATTGACTCCATGATAAA
CTGTTTTATTCTTATATTTATTAGTATCGCGCCTTTTTGACTATTATTAT
CTTCTTTGTCCTTTGCGATTGTCCCAATTTTTCTCTCTTTATTATCTTTT
GGTTTTTTCCCATATTATTCTCCACCGTCCATTTTATATATTCTCCTCCC
TTCTCCCTTTCTTTTTTTCTCTCTTCTCTCCCTCTTTCTTTTTCTTTTCA
CTAATTTTTACCCTACATTTTTTGCCGTTTTTCTTCTCTTCTACCTTTTT
TTATTATTCCCCCCCATTTAATTTTTTCTTTTTCTTCTACTCGTTTATTC
GTCCTCTTTTCCACCCTTTTTTTAATTTTTCTCTCGATAATTTTTCTTTG
GCCGCCAATATTTTATTTTCCCCCCCCTTCACCCTTTTTTTTTCCGCCCA
CCTCCTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_k20.b1 MSMg01no099_k20.b1 CHROMAT_FILE:
MSMg01no099_k20.b1 PHD_FILE: MSMg01no099_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:16 2005
         (102 letters)



>mm_chrX_158809286_158809787
          Length = 502

 Score =  190 bits (98), Expect = 3e-53
 Identities = 101/102 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactgctgcacctagctttacatgagttctggggctttgaactcaagtcctcacctttgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 cactgctgcacctagctttacatgagttctggggctttgaactcaagtcctcacctttgt 243

                                                     
Query: 61  acagcaagtgcttttatctactgagttattataattagtgtt 102
           |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 242 acagcaagtgcttttatctactgagttattattattagtgtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 102
Length of database: 502
Length adjustment: 8
Effective length of query: 94
Effective length of database: 494
Effective search space:    46436
Effective search space used:    46436
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)