BAC Information

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BAC

Clone NameMSMg01-099N23
ChromosomeX (Build37)
Map Location 60,507,189 - 60,507,570
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC671741, 4933402E13Rik, 4931400O07Rik, 1700019B21Rik, LOC671878, LOC666695, EG627420
Downstream geneLOC666729, EG627470, 3830417A13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099N23.T7 (MSMg01no099_n23.b1)MSMg01-099N23.TJ (MSMg01no099_n23.g1)
ACCAG315708AG315709
length7222,057
length of high quality
(start - end)
573 (41 - 613)---
definitionCHROMAT_FILE: MSMg01no099_n23.b1 PHD_FILE: MSMg01no099_n23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:32 2005CHROMAT_FILE: MSMg01no099_n23.g1 PHD_FILE: MSMg01no099_n23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CACAGGAAGACCAACAGAATCAATTAACATGAACTCCATTCATTCCCAGA
CTCTGAATCACCAACCAAAAAATATCATATATGGACTGGACCTAGGCCTC
TGATATATATGTATCAGATATGCAACTGGGCCTAAATGTGGGTCCCAAAC
AACTGAAGCCAGGGCCTATATATGGGATAAGTTCTGCTAGCTGTGGCACC
TTGTCTGGTCTCACAGGGAGAGGTGCCTAGCTTCACAAACACTTGAAGTG
CCAGGGTTGGGGGAATATCCAGGGGACCCTACCTGCTCAAAGAAGGAAAT
TGGAGAATGGGAGAAGGAATTGGGGAGGAGGTGACAGGGAGGGGACAGTG
AGGAAGATGTAAAGTGAATAATTAAAAAAAAATTAAAAATGATAGCGAGA
TAGAGACACTCCCCACATTTCTTCTCTCCAACACAATATTTTCTGCAATG
ACTGCTGCTCTAAAATACTAAGGAATTGTTGCTTCAGACATAAAATGAAG
TTACATTAATTCTAATAATTTAATTGACCCCATTCTATTTTGTTACCATC
TTTAACTTGACAGTCAAGCAGTCGTTAGCTTCCTAATACAATGGCAGCAA
ACTTACTCTGAAATATCAGTGACATGAGGGAGGTAAGTCCCAAGAATAAG
TTGTGTCCTACGTTCAATGTGA
CGGCGCTGCTCGCGTCCTCTCTGCGTNNCCGATNCTATTCTGATTTCTCC
TCTTCTGACCTTACCGGTTGACGTCTGTGCTGTCGCCTCTGTGTTGTGCG
GCGATAAATACGTGTCCGCNCGCGATATATATATTATGTGCACCCTGGTT
GACGACGCCAGTGGTATTATACCACATAAACGCACGTGCTGAGCGGCAAC
GAGAGTATNTTTACTACCGCGTCGCGACATATATAACACACTCGACACGA
GATGATCGACTAGATACACATATACGATATGTTACGCGCGTCATAATTGT
AGCCGGCGACAATAGTGTCGACAGCTACACTCGAGCGACACAGACTATCA
GTACATCTGGCGGACGTATACTACCGTGTCGTCGCGCGGTGACATAAACG
ATACTTCACATATTACGCCAACACTCACACACTCACGGTGTGTCGCTTAC
GTCTGTGCGCGCGNGATTTTTCTCGCGTCTGTCCGCCTACGATGTACTGT
ATACTCTTGTCTAGTATTATCTGCACGANCTTCGTCACACTATATACACT
TATCTATAAATCCCGCGCGTACTATATATTANTAGTGGCTGCGCGGCCAG
CTCGCGTGCGCGCGCGCACGACAATTATTTTCTGTATACGTCACTTTATC
TACGCCGCTCACGAATTGATGTACTATGTATGTCATAGNAGATACGTGTG
TATACACAATCTATGATAGATTGACNTATATATACACGCATCGCTCACGA
TCTGCTTCTCTGTTTTCGNTATAATCATATCTATTACGNCTCTACGTCTC
GGTCTATATGCATGTCTAGCGCGCCTNTCGCGTATATGTATATTATCTAA
TAGATGANATAGATCGTCTGTAGCGTCGCAGCGATGATGTACGAGTCGAT
GAGCGACATCACGTAGGCGCGCTAGAATGTCGACTGANGCTAACTCTAAT
ATGTGACTNGTANATTAGTGCGCAGCGCTTCTACGCTGCATTCGTNTGTT
CATCGATCGCGTATNCTAAACTCTCATCGANCGGNCGTATATNTATTTCT
GATACGATGTCAACGATACGTCANCGACATACGATCGCTCTAACTTTATC
GCTGTAGTACATCACAGCTGTCGCATCCCGCCGTCGTGCGTGTGTTCGCN
TGCGNCTACGATCTGATAGCAGNGAGTCANTGCTCTATTCANAGACTCTT
CCGTACTATCTACGCAGTGCANGACGTCGTGACGNCATGATTAGACGACG
ACTACGACCATTGTCATGNCNGTATGCTCGCTGAANCGTCGTCTGACATA
CATTATAAATCACTTACACATATGTCGTCGTAGTGATCTATGTAAGCCGN
CCTGCTCGNGTATTNTATCTATACGCNGNCGCACGCCGCTCGGCGCGCAC
GATACGTCGAAATCTACCATAATAAACTTTGCGCGCACTGCGCNCATCTA
GTTAATACGTCGCGCTGGTCGTGANTANCTGCTTTATCATACATCTCACG
ANGTCNCGATATANCACGTCGTGTANACTACATNCGTGATTATATATCGT
CTTTATTATACTATCGTCGCGTANGCANGCGATTGAGATATAGTNATNTT
CACGACGANCACTACGCAANTATATNATATGATATCCGATTATTTNCAAC
TGATACAACTAGTAGCTGTCTCGTCATACGCACACATCATTTTTATGTAT
NANTAATATCTACTATNCCCGCGNNCGCACTGANTGNACTCGAGAGAGGT
CAGTAGATTNACTATAGTAGCTATGATGTAAACGTTACNGCTGGCGCGTT
ATATGATCTCNNGCGCGCGCGCCTACTGATATCATCACTGCTGCTCAGCC
TGATATATNACTTATATATTTNNATNNTTNTNTGCGACGCGCNGAGAGCC
TATAACTATCTCTCTATCAGATACGTGCGTCCTCGAGCGATGANTNAGTA
GTAAGTCTAGTGTCGTCGCGCGNGCGCCGGTCGATNANCGANCGATCGCN
TNATTTTATTAATTATCTCGCAGCGTNGCCGATGCGACATCACGTCATGT
CATCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_n23.b1 MSMg01no099_n23.b1 CHROMAT_FILE:
MSMg01no099_n23.b1 PHD_FILE: MSMg01no099_n23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:32 2005
         (573 letters)



>mm_chrX_60506599_60507571
          Length = 973

 Score =  725 bits (375), Expect = 0.0
 Identities = 381/383 (99%), Gaps = 1/383 (0%)
 Strand = Plus / Minus

                                                                       
Query: 191 gttctgctagctgtggcaccttgtctggtctcacagggagaggtgcctagcttcacaaac 250
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 972 gttctactagctgtggcaccttgtctggtctcacagggagaggtgcctagcttcacaaac 913

                                                                       
Query: 251 acttgaagtgccagggttgggggaatatccaggggaccctacctgctcaaagaaggaaat 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912 acttgaagtgccagggttgggggaatatccaggggaccctacctgctcaaagaaggaaat 853

                                                                       
Query: 311 tggagaatgggagaaggaattggggaggaggtgacagggaggggacagtgaggaagatgt 370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 tggagaatgggagaaggaattggggaggaggtgacagggaggggacagtgaggaagatgt 793

                                                                       
Query: 371 aaagtgaataattaaaaaaaaattaaaaatgatagcgagatagagacactccccacattt 430
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 792 aaagtgaataattaaaaaaaa-ttaaaaatgatagcgagatagagacactccccacattt 734

                                                                       
Query: 431 cttctctccaacacaatattttctgcaatgactgctgctctaaaatactaaggaattgtt 490
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 cttctctccaacacaatattttctgcaatgactgctgctctaaaatactaaggaattgtt 674

                                                                       
Query: 491 gcttcagacataaaatgaagttacattaattctaataatttaattgaccccattctattt 550
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 gcttcagacataaaatgaagttacattaattctaataatttaattgaccccattctattt 614

                                  
Query: 551 tgttaccatctttaacttgacag 573
           |||||||||||||||||||||||
Sbjct: 613 tgttaccatctttaacttgacag 591


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space:   542169
Effective search space used:   542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)