BAC Information

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BAC

Clone NameMSMg01-102G09
ChromosomeX (Build37)
Map Location 19,909,985 - 19,910,249
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043953, BC049702, LOC675558, LOC668995, LOC385336, Chst7, Slc9a7, LOC668277
Downstream geneLOC100043954, EG668996, Rp2h, LOC668283, Phf16, Rgn, Ndufb11, Rbm10, Ube1x, Pctk1, Usp11, LOC100043955, Araf, Syn1, Timp1, Cfp, Elk1, Uxt, A230072C01Rik, Zfp182, Spaca5, D930016N04Rik, Ssxa1, Gm1848, EG546268, EG629024
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102G09.T7 (MSMg01no102_g09.b1)MSMg01-102G09.TJ (MSMg01no102_g09.g1)
ACCAG317554AG317555
length758698
length of high quality
(start - end)
273 (86 - 358)241 (61 - 301)
definitionCHROMAT_FILE: MSMg01no102_g09.b1 PHD_FILE: MSMg01no102_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:59 2005CHROMAT_FILE: MSMg01no102_g09.g1 PHD_FILE: MSMg01no102_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCCGCGNGAGTCTCAXXXXXXXXXXXXXXXXXXXXXXXXXCTATTTC
AAGAGGAGCCGCGGAATTCCTGAGCCTTTCACTCATGGGAACAGTAAAAT
GGTTATTGGAAGTCACTAAGCTTGGAGGTAATTTGTTCCTGAGCAATAGT
AAGCAGAATGCACAGGCTACAGAGCTGACTGTGCTAAATGCTCAAGACCA
TCTGTGCACACTTGCAGAGTATGCTCTCAGGCATTCTCTGGCTCTGCAGG
AACCTGGAAATAGCTCAAAGAAATCCTCCCATATGGAGATTTGACAAGAG
ACTTTTCCAGATTTCAAGTATCATTTTTAAAATCCACTGTATGGTTTTTC
TTCAAGATGCAAGTATGTGACAAATGTAGTCCAACAGCGAATACAGGTCT
AATAAAGTGGCAAGTTAGTCACTCGACATGCTTTCTGAGCCTAAATACTT
TGTGAATGTTTTGCAATTTCATCCAGCTCGTATCAAGCTTTTGTTTACTT
TTGCATTGGCCAAACTCATGATACTAGTCCACCCCGCTATATGATTCATG
AAGCATTATCCAGTTAATCTTAGGTACTTTACCTTTTCAAGTAAAAACTC
TTTTTTGAACGACCACAGTCCTCTCCTCCCATTTTACTTCCTAGATTCTC
CCCTACCTATCCACCGCTTATGCCTTGTCGGCCCCACCACCCCCTCTCCG
AACCTCTCCCATTTCCCTTTACTTCATCACCTTCTACAGTTCTCACTCTT
GCCTCACA
TGAAGTGGTAGGCTGGCGGCGCCTGTTCACGACATTGGGTGAACTATAGA
ATTTCCGCGGAATTCTCACCTGAGGAAACCAAAGGGCTGAGAAGCACCTG
AAAAAATGTTCCCCATCCTTAATCATCGAAATGCAAATCAAAACAACCCT
GAGATTTCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTG
ACAGCAGATGCTGCTGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGT
TGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTT
CCTCATAATATTATATATAGTACTACCAAAAGATCTAGCAATATCTCTCC
TGGGCATATACCCAGAAGAAGTTCCAACTGGTAATAAAGATACATGCTCC
ACTATGTTCATAGCAGCCTTGTTTATAATAGCCAGCAGCTGTAAAGAACC
CAGATGTCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACA
TAATGGAGCACCACTCAGCAATTACAAACACTGATTTTATAAAATTCTTA
GCCAAATGGATGCATCTGGAAGATATCATCCCGATATCACCCCCTCACAT
ACGCACACTCATGATACGCACTTACATATGTACTCCCTGAATACTGATAA
TGTCCCTTATAACTTATACTATTCCAGTTTTCTATTTATTATACCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_g09.b1 MSMg01no102_g09.b1 CHROMAT_FILE:
MSMg01no102_g09.b1 PHD_FILE: MSMg01no102_g09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:59 2005
         (273 letters)



>mm_chrX_19909785_19910457
          Length = 673

 Score =  482 bits (249), Expect = e-140
 Identities = 261/265 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgggaacagtaaaatggttattggaagtcactaagcttggaggtaatttgttcctgagca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 tgggaacagtaaaatggttattggaagtcactaagcttggaggtaatttgtttctgagca 260

                                                                       
Query: 61  atagtaagcagaatgcacaggctacagagctgactgtgctaaatgctcaagaccatctgt 120
           |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 atagtaagcagaatacacaggctacagagctgagtgtgctaaatgctcaagaccatctgt 320

                                                                       
Query: 121 gcacacttgcagagtatgctctcaggcattctctggctctgcaggaacctggaaatagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcacacttgcagagtatgctctcaggcattctctggctctgcaggaacctggaaatagct 380

                                                                       
Query: 181 caaagaaatcctcccatatggagatttgacaagagacttttccagatttcaagtatcatt 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 caaagaaatcctcccatatggagatttgacaagagacttttcgagatttcaagtatcatt 440

                                    
Query: 241 tttaaaatccactgtatggtttttc 265
           |||||||||||||||||||||||||
Sbjct: 441 tttaaaatccactgtatggtttttc 465


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space:   175296
Effective search space used:   175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)