BAC Information

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BAC

Clone NameMSMg01-105F01
ChromosomeX (Build37)
Map Location 119,305,809 - 119,306,414
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC385419, EG434907, EG245575, LOC100039544
Downstream geneNap1l3, 3110007F17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105F01.T7 (MSMg01no105_f01.b1)MSMg01-105F01.TJ (MSMg01no105_f01.g1)
ACCAG319702AG319703
length716710
length of high quality
(start - end)
606 (83 - 688)470 (77 - 546)
definitionCHROMAT_FILE: MSMg01no105_f01.b1 PHD_FILE: MSMg01no105_f01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:54 2005CHROMAT_FILE: MSMg01no105_f01.g1 PHD_FILE: MSMg01no105_f01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TACTGAGCAGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCTCAGAGTCCCGAGTAATGTGTAATGTTCTCAGGG
TAGAAATACAGGATATATTTATTGAATGAATGCATAAAATCTTTATTTAT
CTTATTTAGAAGATTCTCTTGTCAGTATATTAACCATTCTTTTTCAAAGA
GAAAATCCCCTTATGTTATATTTGTTCAACTTATTTTAGTGGCTACATTC
TATTACTTCTAAAAAATTTATTGTTTCTAATTTGTTAGCTTTTATATGGC
AAATATATTTCATGTACTTATCTAATCATGAGGACAGACATGCATTTTCT
ATTTCTTTGAAACATGATTACCATATCCTTTATGCTTTACTCTAATCTCT
AATTACTCTCAACAAACTTTTCACATTTTAGCATTCAAACATTGCCAGGG
GCCAGCCCCAGCATGGGGTTCTTCTTTCTGGTTGGTTCTTCTTGAGGCAC
CAGAGGGGGAAGTCTTTGTCTTACTTCCAGGGTAAGATTTTGTCTTAGGA
GAAATTTAGGGTTGCTGTATAATACGAAGTTTACTTTTCTAAGTTTAAGT
TACTATGTTATTGTAGCTGACCTGCCTTCTGTGATCCTCTGAGGCCAGAA
ACTGCAGTTTCTGGCACTTAGCACCTCATCCTAAAATAGCAGGAGATTAA
GTAAAGGATTACTTGT
NTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTAAGAATGTTAACTATTCAATA
ACATTCAAATTCACTCCTAGTAGAGACATTGAAACTAATTAGGCATTACA
AAGTAAAGAGCTAGAAAAGCTTAGGGCTAGTCTGCATAGTGATTACTTAG
GATAATAGCCAAGTCTTACCCAATCACGGGAATACACATTGGCCTAAGGA
TTAGGTTGTTTAACCATGAAAGGGTTTGTGGAAGGGAATTCCTCTGGTAC
AGGTTTCTTCAGTAGGCCCAAAGGAATAGCATAATCAGGTATTTACTAAG
AACCTCTCATAGTGGGTTTAACAATAGAGTAGCATTACATCAGAGCATTC
ACTCTGGCTCCATTTTATGTGGTAAATGCAGCATGGTCCCTGCCATCTTT
TAATGTATGCATTCCTTTTGTTTTCTGTCACTGTAACTTGGTGGATGTGT
TCACCTGTTTTTCTTTTTGTTTTTCTTCTGTATAAAAAGAGTCTGGTGTT
AGCTTGGACAATACATTCAGATCCAACACACTCTCTCATATCTGCATCTG
TCTGTCAATTCCTGCCTACTCCATGTCCATCTACCAGAGACCCTGATTCC
CACGGATTGAGCGGGGCCGACTGAGCCTGGTCCGTGGCACTTATGGCCAC
GTACTACAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_f01.b1 MSMg01no105_f01.b1 CHROMAT_FILE:
MSMg01no105_f01.b1 PHD_FILE: MSMg01no105_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:54 2005
         (606 letters)



>mm_chrX_119305609_119306614
          Length = 1006

 Score = 1164 bits (602), Expect = 0.0
 Identities = 605/606 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgtaatgttctcagggtagaaatacaggatatatttattgaatgaatgcataaaatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgtaatgttctcagggtagaaatacaggatatatttattgaatgaatgcataaaatct 260

                                                                       
Query: 61  ttatttatcttatttagaagattctcttgtcagtatattaaccattctttttcaaagaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttatttatcttatttagaagattctcttgtcagtatattaaccattctttttcaaagaga 320

                                                                       
Query: 121 aaatccccttatgttatatttgttcaacttattttagtggctacattctattacttctaa 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagtccccttatgttatatttgttcaacttattttagtggctacattctattacttctaa 380

                                                                       
Query: 181 aaaatttattgtttctaatttgttagcttttatatggcaaatatatttcatgtacttatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaatttattgtttctaatttgttagcttttatatggcaaatatatttcatgtacttatc 440

                                                                       
Query: 241 taatcatgaggacagacatgcattttctatttctttgaaacatgattaccatatccttta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taatcatgaggacagacatgcattttctatttctttgaaacatgattaccatatccttta 500

                                                                       
Query: 301 tgctttactctaatctctaattactctcaacaaacttttcacattttagcattcaaacat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgctttactctaatctctaattactctcaacaaacttttcacattttagcattcaaacat 560

                                                                       
Query: 361 tgccaggggccagccccagcatggggttcttctttctggttggttcttcttgaggcacca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgccaggggccagccccagcatggggttcttctttctggttggttcttcttgaggcacca 620

                                                                       
Query: 421 gagggggaagtctttgtcttacttccagggtaagattttgtcttaggagaaatttagggt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagggggaagtctttgtcttacttccagggtaagattttgtcttaggagaaatttagggt 680

                                                                       
Query: 481 tgctgtataatacgaagtttacttttctaagtttaagttactatgttattgtagctgacc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgctgtataatacgaagtttacttttctaagtttaagttactatgttattgtagctgacc 740

                                                                       
Query: 541 tgccttctgtgatcctctgaggccagaaactgcagtttctggcacttagcacctcatcct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgccttctgtgatcctctgaggccagaaactgcagtttctggcacttagcacctcatcct 800

                 
Query: 601 aaaata 606
           ||||||
Sbjct: 801 aaaata 806


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space:   593616
Effective search space used:   593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)