BAC Information

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BAC

Clone NameMSMg01-105G10
ChromosomeX (Build37)
Map Location 41,505,509 - 41,505,758
singlet/doubletsinglet
Overlap genenone
Upstream geneOdz1, Gm362, LOC100039977, LOC100039987
Downstream geneLOC637141, Wdr40c, Wdr40b, LOC665585, 1110059M19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105G10.T7 (MSMg01no105_g10.b1)MSMg01-105G10.TJ (MSMg01no105_g10.g1)
ACCAG319766AG319767
length722715
length of high quality
(start - end)
381 (47 - 427)250 (72 - 321)
definitionCHROMAT_FILE: MSMg01no105_g10.b1 PHD_FILE: MSMg01no105_g10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:01 2005CHROMAT_FILE: MSMg01no105_g10.g1 PHD_FILE: MSMg01no105_g10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTCTACACTGGCGCATCATAACTTCACAGGACCAAGGGCCTCTCC
TCCAATTGGTGCCCAACAAGGCCATCCTCTGCTACATATGCAACCGGAGC
CATCGGTCCCTTGCTATGTACTCTTTGATTGGTGATTTAGTCCTTGGGAG
CTCTGGGGGATCTGGTTGTTTGATATTGTTGTTCTTCCTATTGGGTTGCA
AACCTCTTCAGCTCCTTCAGTCCTTTCTCTAATTCCTCCATTGGAGACTC
CATGCTCAGTACAATGGTTGGTTGCTAACATCTGCCTCTGTATTTGTCAT
GGCAAAGCCTCTCAGGAGACAGCTATATCAGGCTCCTGTCAGCAAGCACT
TCTAGGCATCTGCAATAGTGTCTGGGTTTGGTGTCTATATATGGCATGGA
TCCACAGGAGGCGCACATTTCTGGATGGTCTTTCCTTCATCCTCTCCTCT
AAAGTTTGTCCCCATATTATCTTTTTATACTGTAACATTTGCGCTTGATT
TTTCGGCATATGACTGTGTGGGTCTCCTTTCCCCTAATATGTATGCCTTG
CCATAACCTGTGTAATACGGCCTCCCTAACGTTTTTTCCTCCCCCTTTTG
ATGGGCATTTTCCGGGAATTCCCATCCCCTGCTCGATTCTTTTTCAATTT
GAAAACTTTTTCATTCTCCCTC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAATGGAAGTTATTAATTAAACAAAAAATA
TCATCTGAGTTGTATAACCCAAAATCCAGAAATTTGCCTTAAAAGAATTC
ACAAAGTTGAAAACACAAGCCAACTTAATCACATCTCAAGAGAAATGAAC
GTCATTAGAAACTGACTGGAGAATGACCCAGGTCTTTGAATTAACATAAA
GGAGTTCAAATTTATGTATGTTTTACAATATATGATATCTGAAAAAATAT
GAACAAATAGAAACTATCAATTTCAGAAGGATAGCACCAGAAAGTACATT
TTTGTGAATAAAATATTATAAATTCTCTTTGATTTAAAAATGATCAGATG
ACTTGAAGATATAAACACCGGACGTTACATACTATTGAGAAATACAAAAT
GACAAATCATAGTTTAACTATACTTCTGGAGACCCTCACAATCACACTTA
CAAAGTCTAATACGTATCTAACACATGCTTACAATTTGCAACTTGTATTA
CTAACAAAAAAATTGAGGCACAATATTCTACGATTATCAGGTCTATTTTT
TTATAAAATGTATACATTCAACTAACTAAGTTATTCCATTTTAACTTCCA
ACACAAACACACCTCCAAAGTAATCTGCCCACAAACATATCCAACATGGT
TATATCTACTCCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_g10.g1 MSMg01no105_g10.g1 CHROMAT_FILE:
MSMg01no105_g10.g1 PHD_FILE: MSMg01no105_g10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:01 2005
         (250 letters)



>mm_chrX_41505309_41505958
          Length = 650

 Score =  476 bits (246), Expect = e-139
 Identities = 249/250 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatggaagttattaattaaacaaaaaatatcatctgagttgtataacccaaaatccagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 aatggaagttattaattaaacaaaaaatatcatctgagttgtataacccaaaatccagaa 391

                                                                       
Query: 61  atttgccttaaaagaattcacaaagttgaaaacacaagccaacttaatcacatctcaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 atttgccttaaaagaattcacaaagttgaaaacacaagccaacttaatcacatctcaaga 331

                                                                       
Query: 121 gaaatgaacgtcattagaaactgactggagaatgacccaggtctttgaattaacataaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 gaaatgaacgtcattagaaactgactggagaatgacccaggtctttgaattaacataaag 271

                                                                       
Query: 181 gagttcaaatttatgtatgttttacaatatatgatatctgaaaaaatatgaacaaataga 240
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 270 gagttcaaatttatgtatgttttaaaatatatgatatctgaaaaaatatgaacaaataga 211

                     
Query: 241 aactatcaat 250
           ||||||||||
Sbjct: 210 aactatcaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)