BAC Information

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BAC

Clone NameMSMg01-108J17
ChromosomeX (Build37)
Map Location 54,100,071 - 54,100,487
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666268, LOC666107, LOC626348, LOC100039146, LOC100039160, EG630825, LOC100039187, LOC673263, 3830403N18Rik, LOC626439, Gm773, LOC100039254, LOC100039266, LOC100039276, 1600025M17Rik, Zfp449, LOC100039317, 6330419J24Rik, 6530403M18Rik, LOC100039346, Ddx26b, Gm648, Tmem32, Slc9a6, LOC100039342, Fhl1, Mtap7d3
Downstream geneGpr112, Brs3, Htatsf1, Vgll1, Cd40lg, Arhgef6, Rbmx, Snord61, Gm364, Gpr101, Aldoa-ps, EG666441, LOC666447
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108J17.T7 (MSMg01no108_j17.b1)MSMg01-108J17.TJ (MSMg01no108_j17.g1)
ACCAG322009AG322010
length949708
length of high quality
(start - end)
---424 (83 - 506)
definitionCHROMAT_FILE: MSMg01no108_j17.b1 PHD_FILE: MSMg01no108_j17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:31 2005CHROMAT_FILE: MSMg01no108_j17.g1 PHD_FILE: MSMg01no108_j17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCAGGAAAAANCCAAAAANTTNCNNCCCNNNNNAAAAAANCNCNTTCCC
AAACAAAATCCNCNNNANNNCNNNNNTCCCCAAAAAAAAATNNNNANNNN
ANNANGNNANNNANNANNNNNNAANAAAANNNAAGGGAAAAATCCCGATG
GGGGGGGGGGGCGGGGGGGGAAGAGGGGGGGGGGGGGGAGGCCNNNNNNN
NNNNNNANANNNNTNNAAAATGAAAAAAAAAAAAAAAACAGAAAAAAAAA
AGANNNNNNNNGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTNN
NTNNNNNGGTATATGGGAAAAAAAAGAAAAAACTNNNNNNNNNNNNNNTN
NATNNTAAAAAAAAAAAAAAACATTAATAAAAAAAAAAAAAAAAAAAAAA
AAAACTAGGGCTGGGGGNNNNNNNNNTTTTGGGGGAGAAAGAAAAAAAAC
AAAANNNNNCNNNNTNNNNTTNNNTNNNTTTTTNANNNNNNNNNNNNNNN
TTNTNNNNNATNNTNNTNNNTNTNTTTTNTNNNCNNNNNCNNNNNCNNNN
NNNNNNTTTTTTTNNNNNNTTTNNNNNCCAATAAAAAAACTCTCTAATTT
ATAAAAAAAAAAAAAAAAAAAACATCTTNAACTCTTAGAAANNNNNNNNN
NNNTNNCNNNNNNNCNNNNTNNNNNNNTNTNTTNTNNNNNNNNNTNNNNN
NNTTNCCCTCNTTCTTTTTTTTTGTTTTGTTTTTTGCGGTCAGCCTTNCN
CNTNTNNNTCNNCTTNNNNNNNTTNTTTCTTTTTNTCTTCCTTCCTTCTC
TTTTCCNNCTCCCCCCCCTTNNCCTCTCTTTTCCTCNNTCCCCNCCCCCC
CTCTCCCCTCCTCTCTTCTTTTTTTTNTCCTCTTNCCCTTTCCCTCCTTT
CTTTCTTCCCCTTCTCNTNCTTCTTTTTTTCTTCTCTTTTTAAGTAAAA
TTCTTTCTCTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCCTCTTGTAGGAAGC
ACTACACTTAAGAGAAAACTGGTAAGGGCAGGGTTAAAGCATCTAGAGTT
AACTGAGTCTATGATAAGAGGTACTGGGAAAGGACTCAAATATGATGATG
GCTTGATGATACTGGGACCTTAGGAAAATATGAGGGCAACACTGGTCAGT
TCCCAGCAATACCTTGTAATGAAGATATCACAACTTCTTCCTGCAAAGTA
CCCATTAACCCAGAGAATGCTTTATGTAAGAATATGAACAAGAAAGTTAG
CTTTGACGTCTGAAGCTGTATGGCGCCAGTTTCCTAGCATAGGGTGGGGT
AAAGGTAGGGAAGTATAATAATGTAGGGAAAATTAGTTTTTCCTTTTTCC
TTTTTCTTTCAAGACAAGGTTTCTCTGAATAGCCCTGGCATCCAAGAACT
GTCTCTGCAGACCAGGGGTAGCTTCAAACTCAGAAATCTGCCCACCTCTG
CCTCCCGAGTGTTAGGATTATAGTGTTGCACGACCACATCCAGCCTTATT
AATTTTTTTTAAATGGCTAGGACCTGCGGTTTTAAGTTCTGCGATGCCAA
ACTAGCATCCTGCTTCTGGCAATATACTATGGCCTCCCGAATTTGTGTAA
TCATCGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_j17.g1 MSMg01no108_j17.g1 CHROMAT_FILE:
MSMg01no108_j17.g1 PHD_FILE: MSMg01no108_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:31 2005
         (424 letters)



>mm_chrX_54099871_54100694
          Length = 824

 Score =  750 bits (388), Expect = 0.0
 Identities = 413/426 (96%), Gaps = 11/426 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttcctcttgtaggaagcactacacttaagagaaaactggtaagggcagggttaaagcat 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 cttcctcttgtaggaagcactacacttaagagaaaactggtaaggggagggttaaagcat 260

                                                                       
Query: 61  ctagagttaactgagtctatgataagaggtactgggaaaggactcaaatatgatgatggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctagagttaactgagtctatgataagaggtactgggaaaggactcaaatatgatgatggc 320

                                                                       
Query: 121 ttgatgatactgggaccttaggaaaatatgagggcaacactggtcagttcccagcaatac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgatgatactgggaccttaggaaaatatgagggcaacactggtcagttcccagcaatac 380

                                                                       
Query: 181 cttgtaatgaagatatcacaacttcttcctgcaaagtacccattaacccagagaatgctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttgtaatgaagatatcacaacttcttcctgcaaagtacccattaacccagagaatgctt 440

                                                                       
Query: 241 tatgtaagaatatgaacaagaaagttagctttgacgtctgaagctgtatg--gcgccagt 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||  | || |||
Sbjct: 441 tatgtaagaatatgaacaagaaagttagctttgacgtctgaagctgtatgatg-gc-agt 498

                                                                       
Query: 299 ttcctagcatagggtggggtaaaggtagggaagtataataatgtagggaaaattagtttt 358
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ttcctagcagagggtggggtaaaggtagggaagtataataatgtagggaaaattagtttt 558

                                                                       
Query: 359 tcctttttcctttttctttcaagacaaggtttctctgaatagccctggcatccaagaact 418
           |||||||||       ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tcctttttc-------tttcaagacaaggtttctctgaatagccctggcatccaagaact 611

                 
Query: 419 gtctct 424
           ||||||
Sbjct: 612 gtctct 617


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space:   338225
Effective search space used:   338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)