BAC Information

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BAC

Clone NameMSMg01-108J20
ChromosomeX (Build37)
Map Location 92,537,913 - 92,606,181
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC385495, LOC670263, LOC100042098, LOC631145, 0610008C08Rik, EG668148, Maged1, LOC668150, EG385499, EG668156, Gspt2, LOC385500, Zxdb, LOC631331, EG631319, Zxda, Gm371, 9630042H07Rik, Arhgef9, LOC619688, LOC100042189
Downstream gene2810002O09Rik, Asb12, LOC668202, AK129302, A130028J20Rik, 1700010D01Rik, Las1l, Msn, Psmb7-ps1, LOC668221, Vsig4, B230358A15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108J20.T7 (MSMg01no108_j20.b1)MSMg01-108J20.TJ (MSMg01no108_j20.g1)
ACCAG322015AG322016
length699723
length of high quality
(start - end)		600 (71 - 670)460 (77 - 536)
definitionCHROMAT_FILE: MSMg01no108_j20.b1 PHD_FILE: MSMg01no108_j20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:32 2005CHROMAT_FILE: MSMg01no108_j20.g1 PHD_FILE: MSMg01no108_j20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,605,617 - 92,606,181)(92,537,913 - 92,538,372)
sequence
TATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTACAATTCTCAAATGGGATCAGTATAACTATCTCTCCCTCTCC
CTCTCTCTCTGTCACACACATACATATACACAACTCAAACATAGGATCAG
TACAAATCTATGTCGCCCCTCCTTCCCCTCCCCAAGGTCTCTTTCTCCTC
TTCTTTTTCTCCTTTAGGGTTTTTCAGGCTGTTGTAAAAAATAAAGATGA
TTTGGTTGCTTTTAGCTTTCCCTACTGCAAAATTGTATTGCAAGAGGTCT
ATCAAATGGCTAGTTATTTATATGATTGTAGAGCACATATTTAGCATACA
CGAAGCTCTAGGTTCATCTACATGACTCTTCACACCAAAGTAATAAAAAG
AATCCTAGTAGCCAGTAACTTTCCTGGATGATCCCTGACTGTAACTCAGC
TCTTCAGAGGCAGAGGCAAGAGGATCTTTAATTCAAGACCAGTGTGGACT
GTATAGAAAGATCCTGCTTCAAAAGACAAAAGCAAATGTGAAAATCAAAT
AAAAGAATAAGAAGTCTATTGAGGACCTGTTCACTTCTGTTGTCTCTGTC
CTATGCCTGTTCACCTCCAGGGACACAGGTTATTGGAGAAGTTTTCTTCT
TGAAGAGTTAGAAGTGATTTAACTGAGTCCCTGGGGTCTACATAAATTC

TCACGATGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACATTGGCATTCTCATATTGAC
AAGTTTACAGATTATTCATCATGTAACAGTCTTAGAAGACATATTTCCAA
TTCAATTAGTTTATTGTTATTTCCATTATTATCATTTCACATTAGTAATA
GGCACTTGTATAGTCATTAAACATTTTGAGCCTTCTACCCATGAAATCCA
AATTATTACTCCCAAAAATTCAGATACAAAAACTGATGCTCAAAAGGGTA
AATTTATTATTTATTCTAAATCTGACAAATATTAAGTAGCCGAGCCAACA
TTTTAATTCAAGTGTGTTTGACTTTAAGAGAGATGCCACTTTATCACATT
GGGTTGTCAGGAAACAAAATCCACTGGCTTTCCTATTTATGTCAATAACC
ATTTGTTGACTGAGCAAGTGAGAGCCCAAGTGAATGAGAGACATACAGAA
TTGGTAGAGTGACATGGAAATAAGAAGGAACTTATTGACTAGTGGGCATT
CATGTATGCTAGGAACTGGGATGGGACTATTCTTAAATTTGATTTTACTA
AATCTTCACAATAATCCTGAGTGATAAATGCTATCCAGCATCCCATTTCC
CAGATGGAAAATGGAAGATTACACATGTTCTACAAATTGCTCAAGGCAGT
CGAGTCAAAATGTGGAGTTTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_j20.b1 MSMg01no108_j20.b1 CHROMAT_FILE:
MSMg01no108_j20.b1 PHD_FILE: MSMg01no108_j20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:32 2005
         (600 letters)



>mm_chrX_92605617_92606616
          Length = 1000

 Score = 1062 bits (549), Expect = 0.0
 Identities = 561/565 (99%)
 Strand = Plus / Minus

                                                                       
Query: 2   gggatcagtataactatctctccctctccctctctctctgtcacacacatacatatacac 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gggatcagtataactatctctccctctccctctctctctgtcacacacatacatatacac 506

                                                                       
Query: 62  aactcaaacataggatcagtacaaatctatgtcgcccctccttcccctccccaaggtctc 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aactcaaacataggatcagtacaaatctatgtcgcccctccttcccctccccaaggtctc 446

                                                                       
Query: 122 tttctcctcttctttttctcctttagggtttttcaggctgttgtaaaaaataaagatgat 181
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 445 tttctcctcttctttttctcctttagggtttttcaggctgttgtaaaaagtaaagatgat 386

                                                                       
Query: 182 ttggttgcttttagctttccctactgcaaaattgtattgcaagaggtctatcaaatggct 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttggttgcttttagctttccctactgcaaaattgtattgcaagaggtctatcaaatggct 326

                                                                       
Query: 242 agttatttatatgattgtagagcacatatttagcatacacgaagctctaggttcatctac 301
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agttatttagatgattgtagagcacatatttagcatacacgaagctctaggttcatctac 266

                                                                       
Query: 302 atgactcttcacaccaaagtaataaaaagaatcctagtagccagtaactttcctggatga 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgactcttcacaccaaagtaataaaaagaatcctagtagccagtaactttcctggatga 206

                                                                       
Query: 362 tccctgactgtaactcagctcttcagaggcagaggcaagaggatctttaattcaagacca 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tccctgactgtaactcagctcttcagaggcagaggcaagaggatctttaattcaagacca 146

                                                                       
Query: 422 gtgtggactgtatagaaagatcctgcttcaaaagacaaaagcaaatgtgaaaatcaaata 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 gtgtggactgtatagaaagatcctgcttcaaaagacaaaagcaaatgtgaaaatcaaata 86

                                                                       
Query: 482 aaagaataagaagtctattgaggacctgttcacttctgttgtctctgtcctatgcctgtt 541
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 85  aaagaataagaagtctattgaggacctgttcacttctgatgtctctgtcctatgcctgtt 26

                                    
Query: 542 cacctccagggacacaggttattgg 566
           ||||||| |||||||||||||||||
Sbjct: 25  cacctccggggacacaggttattgg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space:   584100
Effective search space used:   584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no108_j20.g1 MSMg01no108_j20.g1 CHROMAT_FILE:
MSMg01no108_j20.g1 PHD_FILE: MSMg01no108_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:32 2005
         (460 letters)



>mm_chrX_92537713_92538572
          Length = 860

 Score =  866 bits (448), Expect = 0.0
 Identities = 457/460 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcacattggcattctcatattgacaagtttacagattattcatcatgtaacagtcttaga 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 tcacattggcattctcatattgacaaatttacagattattcatcatgtaacagtcttaga 260

                                                                       
Query: 61  agacatatttccaattcaattagtttattgttatttccattattatcatttcacattagt 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agacatatttccaattcaactagtttattgttatttccattattatcatttcacattagt 320

                                                                       
Query: 121 aataggcacttgtatagtcattaaacattttgagccttctacccatgaaatccaaattat 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tataggcacttgtatagtcattaaacattttgagccttctacccatgaaatccaaattat 380

                                                                       
Query: 181 tactcccaaaaattcagatacaaaaactgatgctcaaaagggtaaatttattatttattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tactcccaaaaattcagatacaaaaactgatgctcaaaagggtaaatttattatttattc 440

                                                                       
Query: 241 taaatctgacaaatattaagtagccgagccaacattttaattcaagtgtgtttgacttta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaatctgacaaatattaagtagccgagccaacattttaattcaagtgtgtttgacttta 500

                                                                       
Query: 301 agagagatgccactttatcacattgggttgtcaggaaacaaaatccactggctttcctat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agagagatgccactttatcacattgggttgtcaggaaacaaaatccactggctttcctat 560

                                                                       
Query: 361 ttatgtcaataaccatttgttgactgagcaagtgagagcccaagtgaatgagagacatac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttatgtcaataaccatttgttgactgagcaagtgagagcccaagtgaatgagagacatac 620

                                                   
Query: 421 agaattggtagagtgacatggaaataagaaggaacttatt 460
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agaattggtagagtgacatggaaataagaaggaacttatt 660


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space:   382500
Effective search space used:   382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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