BAC Information

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BAC

Clone NameMSMg01-109B11
ChromosomeX (Build37)
Map Location 152,041,713 - 152,193,316
singlet/doubletdoublet
Overlap genePtchd1
Upstream geneLOC100040899, LOC667331, LOC100040925, LOC100040937, Magea6, Magea3, LOC626034, Magea8, Magea2, Magea5, Magea1, 1700042B14Rik, LOC245676, Amd-ps1, LOC667369, Sat1, Acot9, LOC667383, Prdx4, LOC667394
Downstream gene4930503H13Rik, LOC640803
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109B11.T7 (MSMg01no109_b11.b1)MSMg01-109B11.TJ (MSMg01no109_b11.g1)
ACCAG322361AG322362
length740735
length of high quality
(start - end)
189 (68 - 256)246 (72 - 317)
definitionCHROMAT_FILE: MSMg01no109_b11.b1 PHD_FILE: MSMg01no109_b11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:10 2005CHROMAT_FILE: MSMg01no109_b11.g1 PHD_FILE: MSMg01no109_b11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(152,193,128 - 152,193,316)(152,041,713 - 152,041,958)
sequence
CAAAATTTGCGGCGCTATACGACTCCTATTTCCAGAAATCCGCGGAATTC
TCCAACTATACCAAACTTGGAAAGGAGCCAGCTGATCTTGTTTTAGGATA
AATTGAATTTAAGTAATTAAGAGGACACACGAAACCTTTATCCATATTCG
CTAATGTTGCACCAACTAATAGACTAAAGGAGTTTGCAAATTCTCAGGTG
CCCTCTTAATTGAAGCTGAATTGCTATAACCATAAAACCCATTTTCTCCA
ACTGTGGGCTTGCGAGTAAATGGGACAGGTGATCCCTGATGCATCTCTGC
TGCCAAGTGCAAGAATGTATTTCTACAGCTGCTATCAACACCACAATCCC
CAGTTCACCATGATAATACCCAACGCATTGTCATCTGAAGAACATATAAT
CATACCTTGAAAACACATGTGCAAAAAAACTGCGTTCACCTTCTGTAAAC
ACTCCTGAAACCTCACAAGAAAAGTAAATGTTAAAGAAACTTCTATTAAT
CTCTCTCTCTCACTCTCTCTCTCTACTATCTACTCACTCTCTTATCTCAC
TCTATCTATATCATAAATACACACTCATAATATTTATTTATTAAATCTTC
TTTCTCCACTCACTCTCAGTATGAAATATAATATATCTTTACTATAAAAA
TATATAAATATATATCAAAAATCTTTCTTATACTTAACCTTTCCCTAAGT
TAACATTATCAATAATTGATTATATGATTCTTTTTATATC
AATACAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGACTCAATACTTTCCTCTCTTCTGTCCT
ATCCACCTAGGATTTTTTGTTTGTTTATTTCTCTCTAAGTAAATTTTCTA
CATTTTTAAATTACAAATTTGGTTTTACTTAAGTCACTGTTGCTATAACC
TCTGATCTTATTACCCACTAAATTCTTCATGGTAAAAAATTTAATTTCCT
CATTTTGACTTCTCACTTTCAGGCTGACCAACCTCCAATTCACATCAGCA
CCTGTCTGCCAAATCCAGATCTAAATTTCCATCAGCCTTCTGAAGATTTG
TAGAGACAGGTTACAGCAATATTTTAAATGGACCATAGTCAACAGTTGGA
TATTTCCTACCAAATTGACTATGGCAACTGCTTCATAGCTATTAGTAACA
CAACCCGACTTCCTGCTTTTTATTCCCCCTAGTAGGATACTTGTAAAACC
AAGTCTTTTTTTTCCCTTGATGTTCTCCAAAGTTCTGATGATTTGAAAAC
CTCGTCTATTCTATATGAATATTATGGAATTAACTAAATAAAAATCTGAC
TTGGTATTTATTTGATACCCATTGATATCAATGAATACTATTATTTTTCA
TTTTTTCGATATTATTCATATTTTCTATTTATTTCCTACCTCATTTATAT
TTCTTCTTAAAAACAACATTTTTATATTCTCACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_b11.b1 MSMg01no109_b11.b1 CHROMAT_FILE:
MSMg01no109_b11.b1 PHD_FILE: MSMg01no109_b11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:10 2005
         (189 letters)



>mm_chrX_152192928_152193516
          Length = 589

 Score =  366 bits (189), Expect = e-106
 Identities = 189/189 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggaaaggagccagctgatcttgttttaggataaattgaatttaagtaattaagaggaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tggaaaggagccagctgatcttgttttaggataaattgaatttaagtaattaagaggaca 330

                                                                       
Query: 61  cacgaaacctttatccatattcgctaatgttgcaccaactaatagactaaaggagtttgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 cacgaaacctttatccatattcgctaatgttgcaccaactaatagactaaaggagtttgc 270

                                                                       
Query: 121 aaattctcaggtgccctcttaattgaagctgaattgctataaccataaaacccattttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 aaattctcaggtgccctcttaattgaagctgaattgctataaccataaaacccattttct 210

                    
Query: 181 ccaactgtg 189
           |||||||||
Sbjct: 209 ccaactgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space:   105161
Effective search space used:   105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no109_b11.g1 MSMg01no109_b11.g1 CHROMAT_FILE:
MSMg01no109_b11.g1 PHD_FILE: MSMg01no109_b11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:10 2005
         (246 letters)



>mm_chrX_152041513_152042158
          Length = 646

 Score =  468 bits (242), Expect = e-136
 Identities = 245/246 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgactcaatactttcctctcttctgtcctatccacctaggattttttgtttgtttatttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgactcaatactttcctctcttctgtcctatccacctaggattttttgtttgtttatttc 260

                                                                       
Query: 61  tctctaagtaaattttctacatttttaaattacaaatttggttttacttaagtcactgtt 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 tctctaagtaaattttctacatttttaaattacaaatgtggttttacttaagtcactgtt 320

                                                                       
Query: 121 gctataacctctgatcttattacccactaaattcttcatggtaaaaaatttaatttcctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctataacctctgatcttattacccactaaattcttcatggtaaaaaatttaatttcctc 380

                                                                       
Query: 181 attttgacttctcactttcaggctgaccaacctccaattcacatcagcacctgtctgcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attttgacttctcactttcaggctgaccaacctccaattcacatcagcacctgtctgcca 440

                 
Query: 241 aatcca 246
           ||||||
Sbjct: 441 aatcca 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)