BAC Information

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BAC

Clone NameMSMg01-110B06
ChromosomeX (Build37)
Map Location 43,112,428 - 43,219,584
singlet/doubletdoublet
Overlap genenone
Upstream geneWdr40b, LOC665585, 1110059M19Rik, LOC100040038, EG385346
Downstream geneLOC100040075, Actrt1, EG245405, LOC665632
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-110B06.T7 (MSMg01no110_b06.b1)MSMg01-110B06.TJ (MSMg01no110_b06.g1)
ACCAG323095AG323096
length704705
length of high quality
(start - end)		661 (44 - 704)626 (75 - 700)
definitionCHROMAT_FILE: MSMg01no110_b06.b1 PHD_FILE: MSMg01no110_b06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:32 2005CHROMAT_FILE: MSMg01no110_b06.g1 PHD_FILE: MSMg01no110_b06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,112,428 - 43,113,085)(43,219,186 - 43,219,584)
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTAGCCTTAAACAGGGGCACCTATGCTATAAACCCCCTTCACTGTGC
TCATAGATGACTTCACAACTAGGGGAAGATGTATGAGATCTAGAGTCAGT
GGATATGCACAAATGTCTACTGAATATAACCAGGGAAGCTGTATGAGATC
TAGAGTCAGTGGATATGCACAAATGTCTACTGAATACAACCAGGCATTAT
GTATATGAATTCACAGTAGTTGTGACTGCATCCACAAGACTATAGAAGTT
CAACTAGACAAAATCCCAGCATGAAAAGATGTTAGTTACTTTTCTAGTGC
TGTGATGAGACACTGTAACCTAGGTAACTTATAGTAGAAAAAAAAATATG
TAGGCCTTAGAGTTTCATAAGGTTATAGGCTATCTTGGCAGCAGCAAGGC
AGATAAAAACATTGGCTATGTATTTGAGAGCTTATATATTTAAAAACTTT
TATGACAGAGAACTAACAGGATGAAACAGGATTTTAAACCTCAGAGTCAA
CCACTAATGACATTATCTCTCCCAAAAGTTTTATACCTCCTACACTTTCC
CAAATAATTCCACTAAATGGGTACCAATTATTCAAATATATGAACTTATT
GTGGCCAATCTCATTCAAATCATTATAAAGGGGAGGTGGTCACAAAATCA
CATG

ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATGAAACATTGGTAGGGAAAATATCA
TTGAGAGCTGAATTTTGGTTATTCTTAGAGGAAATATGTTTGAGAGAAAT
AATAGAAAAGTCCAAACTGAATTTCACAACTGACTGAACAGTGTGTATTT
TGTGACAAGAAACATAAGGAGGAGTATATCTGGTACAGTTTATTTCTATA
AAGTTTCAAACACATGCACACACACACACACACACACACACACACACACA
CACACACACACCAGAAATCCTCCTTCAGTCACTAAATATAATACAAAAAA
TTCTTGAAGGCGATATTTTTGTCTCTTTAGCTGGTTGGATGGCTCAAACT
ATAGAAGTATTTTCACTAAACATTATGATATTAGTTTAATCCACAGAAAC
TGCATGATGGACAAAGAGAACCAAATAGCACAAGTTGTCTTCTCACTTCC
ATGGGCAAGATTTGTCTATTGTTTTCATGTGTAAGGAAATTAAAATCCCA
TATATTCACATGTTCTATATGAAGTATATAATAAACATATGTACAACTAT
TAATTCTCAATAGAAAGTAGCAATAACTACTCTGTACACCAGGAAGAATT
TACAAATTATCGTTATTGAATTATTTTCATTAATAGGTAATATATCTCAC
AATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no110_b06.b1 MSMg01no110_b06.b1 CHROMAT_FILE:
MSMg01no110_b06.b1 PHD_FILE: MSMg01no110_b06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:32 2005
         (661 letters)



>mm_chrX_43112225_43113285
          Length = 1061

 Score = 1257 bits (650), Expect = 0.0
 Identities = 656/658 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttagccttaaacaggggcacctatgctataaacccccttcactgtgctcatag 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttagccttaaacaggggcacctatgctataaacccccttcactgtgctcatag 263

                                                                       
Query: 64  atgacttcacaactaggggaagatgtatgagatctagagtcagtggatatgcacaaatgt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atgacttcacaactaggggaagatgtatgagatctagagtcagtggatatgcacaaatgt 323

                                                                       
Query: 124 ctactgaatataaccagggaagctgtatgagatctagagtcagtggatatgcacaaatgt 183
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 324 ctactgaatataaccagggaagctgtatgagatctagagtcagtggatatgcacaaatat 383

                                                                       
Query: 184 ctactgaatacaaccaggcattatgtatatgaattcacagtagttgtgactgcatccaca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctactgaatacaaccaggcattatgtatatgaattcacagtagttgtgactgcatccaca 443

                                                                       
Query: 244 agactatagaagttcaactagacaaaatcccagcatgaaaagatgttagttacttttcta 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agactatagaagttcaactagacaaaatcccagcatgaaaagatgttagttacttttcta 503

                                                                       
Query: 304 gtgctgtgatgagacactgtaacctaggtaacttatagtagaaaaaaaaatatgtaggcc 363
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtgctgtgatgagacactgtaccctaggtaacttatagtagaaaaaaaaatatgtaggcc 563

                                                                       
Query: 364 ttagagtttcataaggttataggctatcttggcagcagcaaggcagataaaaacattggc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttagagtttcataaggttataggctatcttggcagcagcaaggcagataaaaacattggc 623

                                                                       
Query: 424 tatgtatttgagagcttatatatttaaaaacttttatgacagagaactaacaggatgaaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tatgtatttgagagcttatatatttaaaaacttttatgacagagaactaacaggatgaaa 683

                                                                       
Query: 484 caggattttaaacctcagagtcaaccactaatgacattatctctcccaaaagttttatac 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 caggattttaaacctcagagtcaaccactaatgacattatctctcccaaaagttttatac 743

                                                                       
Query: 544 ctcctacactttcccaaataattccactaaatgggtaccaattattcaaatatatgaact 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ctcctacactttcccaaataattccactaaatgggtaccaattattcaaatatatgaact 803

                                                                     
Query: 604 tattgtggccaatctcattcaaatcattataaaggggaggtggtcacaaaatcacatg 661
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tattgtggccaatctcattcaaatcattataaaggggaggtggtcacaaaatcacatg 861


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space:   684201
Effective search space used:   684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no110_b06.g1 MSMg01no110_b06.g1 CHROMAT_FILE:
MSMg01no110_b06.g1 PHD_FILE: MSMg01no110_b06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:32 2005
         (626 letters)



>mm_chrX_43218559_43219584
          Length = 1026

 Score =  764 bits (395), Expect = 0.0
 Identities = 398/399 (99%)
 Strand = Plus / Minus

                                                                        
Query: 227  cacacacacaccagaaatcctccttcagtcactaaatataatacaaaaaattcttgaagg 286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1026 cacacacacaccagaaatcctccttcagtcactaaatataatacaaaaaattcttgaagg 967

                                                                        
Query: 287  cgatatttttgtctctttagctggttggatggctcaaactatagaagtattttcactaaa 346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966  cgatatttttgtctctttagctggttggatggctcaaactatagaagtattttcactaaa 907

                                                                        
Query: 347  cattatgatattagtttaatccacagaaactgcatgatggacaaagagaaccaaatagca 406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906  cattatgatattagtttaatccacagaaactgcatgatggacaaagagaaccaaatagca 847

                                                                        
Query: 407  caagttgtcttctcacttccatgggcaagatttgtctattgttttcatgtgtaaggaaat 466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846  caagttgtcttctcacttccatgggcaagatttgtctattgttttcatgtgtaaggaaat 787

                                                                        
Query: 467  taaaatcccatatattcacatgttctatatgaagtatataataaacatatgtacaactat 526
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 786  taaaatcccatatattcacatgttctatatgaagtgtataataaacatatgtacaactat 727

                                                                        
Query: 527  taattctcaatagaaagtagcaataactactctgtacaccaggaagaatttacaaattat 586
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726  taattctcaatagaaagtagcaataactactctgtacaccaggaagaatttacaaattat 667

                                                   
Query: 587  cgttattgaattattttcattaataggtaatatatctca 625
            |||||||||||||||||||||||||||||||||||||||
Sbjct: 666  cgttattgaattattttcattaataggtaatatatctca 628


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space:   625856
Effective search space used:   625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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