BAC Information

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BAC

Clone NameMSMg01-111J23
ChromosomeX (Build37)
Map Location 61,313,547 - 61,313,928
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666729
Downstream geneEG627470, 3830417A13Rik, Slitrk4, LOC100040011, Ctag2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111J23.T7 (MSMg01no111_j23.b1)MSMg01-111J23.TJ (MSMg01no111_j23.g1)
ACCAG324246AG324247
length1,1191,107
length of high quality
(start - end)
766 (126 - 891)382 (399 - 780)
definitionCHROMAT_FILE: MSMg01no111_j23.b1 PHD_FILE: MSMg01no111_j23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:11 2005CHROMAT_FILE: MSMg01no111_j23.g1 PHD_FILE: MSMg01no111_j23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCCCCTNNNNNNNACAATTGGGCGCTATAGACTCCTATAGGGAGAGGAT
CCGCGGAATTCTCAACTGAAGAATCCCCATAAGACTCGAAGCACTTAAAG
AAATGTTCAGCATCCTTCTTCAACAGGGAAATGCAAATCAAAATGACCCA
GAGATTTCACCTCACACCAGTAAGAATGGCTAAGATAAAAAAACTCAGGT
GACAGCAGATGCTGGTGAGGATATGGAGAAGGACAAACATGCCTCCATTG
CTGGTGGGATTGCATGCTGGTGCAACCACTCTGGAAATCAGTTTGGTGGT
TCCTCAGAAAATTGGACTTAGTTCCCCAGGGAGATCCACCAATGCCACTC
CTCATCATATACCCAGAAGATGCTCAAACATGTAATAAGGACACATGTTC
CACTATATTCATAGCAGCCTTAATTATAATAGCCAGAAGCTGGGAAGAAC
CCAGATGTCCCTCAACAGAGGAATGGATGCAGAAAATGTACATTTACACA
ATGGAGTACTATGCAGCTATTAAAAAAACAATGAATTTATGAAATTCTTA
GACAAATGGATGGATATGGAGGATATCATCCTAAGTGAGGTAACCCAATC
ACAAAGAATGGACATGATATGCACTGAATGATAAGTGAATGATAAGTGAG
CCCAGAAGCTCAGAATCCTTTTTAGAAGGGGGAACAAAATACCCATGGAA
GGAGTTACAGAGACAAAGTTCGGAGCAGAGACTGAAGGAGCAACCATCCC
GAAACTGCCCCACCTGGGGAATCCATCCCATAAACAACCACCAAACCACA
CTATGGCAGATGCCAACAAAAGCTTGCTGCAGGAGCCTGATATAGCTGTC
TCCTGAGGGGCTCTGCCAGTGCCTGGCAAATACAGAAGTTGATGGCCACA
GTCATCCATTGGATGGAACATGAGGCCCCCATTGAAGGAGCCAGAGAGAG
TACCCAAAGGAGCTTGGAGGGGTTTGAAGCTCCATACTTAGGAACATCAA
TAAGAAATTAGCCCGTAACCCTCCAAAACCTCCTTCTTAACTAAACTACC
CATTCAAAATAACCCCCCATGGGGGGAACCTTGGTGGCCTCTTAGCTGGT
TATACCTCAACCAAAAGGA
TTTTTATTGAGGTGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCCTTAAGAACACTAACAAGATTTGCAATGTGAA
GATTCTTGCATTTTAAGACAATTATTGATGAGTCATCTCCTCTTCAAGTG
ACTTGAAATAATAGGGTGACTGTGTTTCTCTTCTGACCTCTGTGGGAATA
CATATAAGTGGCATAGGTGTGCATGGTAACAAAGTACACACAGAGAGAAG
TAAGTGGGGACGATGCTGGGGACGGGTGTTAAAATAAGAGGTACTAAAAC
ACAGACTGAGCTTGGTGTTCCATTATTCTGCAGCTTGGTTGGATGACAAC
GGTTCAGCAAACCTCATTTTTTGTTTTATGAAAACTGAGAAAAGATAACC
TAAAGGACCCAAGTACATAAAAAGATAATAGAGAGAAGGAACTGCTAACT
TTTCTGGTTTGGTCAGTTACTGCCAGGAACAAGTATTAAAATCATACCCT
AAAACACATCATTAAATACAATTAATGTTAATATTTTTATTTAGACCAAA
TAAGAAAAAGTATTATATATTAGAAATGTTTTGAAACCTATTTCTAAGAG
AAGATTGTCACTAAAAGATTTTTCAATTCTAAACTTCTGTGTCTTTAAGT
TTTTCTTTCATTATTATTTTGTTATTTCTAATTGGTCATAATAATTGAAT
TCATGTATGGGTTACAAGTCGATATTTGATCTATGTATACACTGTTGAAA
ACACAATTATGCTAAGTAGAATATCCACCGTGCTCCTATTTTTTGTGATA
AGAACATTAAAACTCTTTTTTTTAAACTTAGCAATAAACAACATATTGTT
TATTAACTATGGTCACCTTACAGTAAAATAGATCTCCTGATATTTGATAC
CCTATACCAACCTTTTTTTCTTCTTTCCCACTTACTTAATCTCCCCACAA
AGCCTCGGCTTTATCACCTTTTCCTATTCTTATTCCCCAAAAAAACTTAA
CCCTTTTTTGGAAAAACTTTTCCCCAAAAACCCTTTGGCCTAATTTTTCC
AAATTTCCAAGGGTCCCCCAAACCTTGGTTTGTTTTCCCCAAAGAAAACC
CCTGGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_j23.g1 MSMg01no111_j23.g1 CHROMAT_FILE:
MSMg01no111_j23.g1 PHD_FILE: MSMg01no111_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:11 2005
         (382 letters)



>mm_chrX_61313347_61314128
          Length = 782

 Score =  739 bits (382), Expect = 0.0
 Identities = 382/382 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctaaaggacccaagtacataaaaagataatagagagaaggaactgctaacttttctggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctaaaggacccaagtacataaaaagataatagagagaaggaactgctaacttttctggt 260

                                                                       
Query: 61  ttggtcagttactgccaggaacaagtattaaaatcataccctaaaacacatcattaaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttggtcagttactgccaggaacaagtattaaaatcataccctaaaacacatcattaaata 320

                                                                       
Query: 121 caattaatgttaatatttttatttagaccaaataagaaaaagtattatatattagaaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caattaatgttaatatttttatttagaccaaataagaaaaagtattatatattagaaatg 380

                                                                       
Query: 181 ttttgaaacctatttctaagagaagattgtcactaaaagatttttcaattctaaacttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttgaaacctatttctaagagaagattgtcactaaaagatttttcaattctaaacttct 440

                                                                       
Query: 241 gtgtctttaagtttttctttcattattattttgttatttctaattggtcataataattga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgtctttaagtttttctttcattattattttgttatttctaattggtcataataattga 500

                                                                       
Query: 301 attcatgtatgggttacaagtcgatatttgatctatgtatacactgttgaaaacacaatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attcatgtatgggttacaagtcgatatttgatctatgtatacactgttgaaaacacaatt 560

                                 
Query: 361 atgctaagtagaatatccaccg 382
           ||||||||||||||||||||||
Sbjct: 561 atgctaagtagaatatccaccg 582


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space:   288329
Effective search space used:   288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)