Query= MSMg01no111_o22.b1 MSMg01no111_o22.b1 CHROMAT_FILE:
MSMg01no111_o22.b1 PHD_FILE: MSMg01no111_o22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:52 2005
(577 letters)
>mm_chrX_88121245_88122221
Length = 977
Score = 638 bits (330), Expect = 0.0
Identities = 365/386 (94%), Gaps = 15/386 (3%)
Strand = Plus / Minus
Query: 1 aaagataataacctctgaatgaggacatcttgcgcttctttaattgataaccatcttaat 60
|||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||| |
Sbjct: 371 aaagataataacatctgaatgaggacatcttgtgcttctttaattgataatcatcttagt 312
Query: 61 agattagagttattctcatcaaatgcattgattgccattttgcttttatttgagtgtcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 agattagagttattctcatcaaatgcattgattgccattttgcttttatttgagtgtcat 252
Query: 121 ttccctatggaaagaggttaaggtaaaccatagcacaatattgggcacaatttcttctcc 180
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ttccctatggaaagaggttaaggtaaaccatagcacaatattgggcacaat--------- 201
Query: 181 tttttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ------ttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttc 147
Query: 241 ttcttcttcttcttcttcttcttcttcttctttcttccgtttttgatagatattttcttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 ttcttcttcttcttcttcttcttcttcttctttcttccgtttttgatagatattttcttt 87
Query: 301 tttattagttttaattttattttttattaaaaaacaatattattaggtattttcttcatt 360
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 tttattagtttttattttattttttattaaaaaacaatattattaggtattttcttcatt 27
Query: 361 ttcacttcaaatgctatcctgaaagt 386
|||| |||||||||||||||||||||
Sbjct: 26 ttcatttcaaatgctatcctgaaagt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 124
Number of extensions: 40
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space: 548289
Effective search space used: 548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no111_o22.g1 MSMg01no111_o22.g1 CHROMAT_FILE:
MSMg01no111_o22.g1 PHD_FILE: MSMg01no111_o22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:52 2005
(653 letters)
>mm_chrX_87987124_87988176
Length = 1053
Score = 1180 bits (610), Expect = 0.0
Identities = 643/654 (98%), Gaps = 2/654 (0%)
Strand = Plus / Plus
Query: 1 gccactgaatctattaatttagatatgccatgtcacttgtaaaaaaaat-aagcattggt 59
||||||||||||||||||||||||||||||||| || |||||||||| | ||| ||||||
Sbjct: 201 gccactgaatctattaatttagatatgccatgttacatgtaaaaaaa-tcaagtattggt 259
Query: 60 gagattatttcatgcaaactgtggtagtatatccaaatacatccttacataaatgttcta 119
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 260 gagattatttcatgcaaactgtggtagtatatccaaatacttctttacataaatgttcta 319
Query: 120 attttaaatatttggtaattttaaacattttgatcctttaatggaaaaataaataacctg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 attttaaatatttggtaattttaaacattttgatcctttaatggaaaaataaataacctg 379
Query: 180 ttatttttctgcattagggttatacaaagcaagtgtagaagctctagaaaggaaggtgac 239
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 380 ttatttttctgcattagggttattccaagcaagtgtagaagctctagaaaggaaggtgac 439
Query: 240 aggaaagtatatcttcatttctttataactacttttaacctgaaattcctatattctgaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aggaaagtatatcttcatttctttataactacttttaacctgaaattcctatattctgaa 499
Query: 300 cactccttggaaagaaaaaaatgtagattgtattagtagatcaaaaacaattctttgtaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cactccttggaaagaaaaaaatgtagattgtattagtagatcaaaaacaattctttgtaa 559
Query: 360 taaaatagtaacttttaaataaataagcagcattatttttattgttccatcagtttctat 419
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 taaaataataacttttaaataaataagcagcattatttttattgttccatcagtttctat 619
Query: 420 ttgtttttaatatttttttgtaagtgttgctgaaaatgcttaggatgttagtatgcttaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttgtttttaatatttttttgtaagtgttgctgaaaatgcttaggatgttagtatgcttaa 679
Query: 480 ttcgtaaattgtaccagcattgattcagttaagaagacttactaaaacagtttctttaga 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttcgtaaattgtaccagcattgattcagttaagaagacttactaaaacagtttctttaga 739
Query: 540 tcataaattctcatcctgtccctcttctcttagaagtaagagagtagctgtgcctgatgg 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tcataaattctcatcctgtccctcttctcttagaagtaagagagtagctgtgcctgatgg 799
Query: 600 ttacaaaagacaccataagatattgcagagaatcctacagagatggaaaactta 653
|||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 800 ttacaaaagacaccataagatattgcagagaatcctgcagagatggaaaactta 853
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space: 670649
Effective search space used: 670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
