BAC Information

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BAC

Clone NameMSMg01-112A10
ChromosomeX (Build37)
Map Location 161,834,202 - 161,834,434
singlet/doubletsinglet
Overlap genenone
Upstream geneFigf, Piga, Asb11, Asb9, Mospd2, Fancb, LOC627045, Glra2
Downstream geneLOC100040753, Gemin8, Gpm6b, Ofd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112A10.T7 (MSMg01no112_a10.b1)MSMg01-112A10.TJ (MSMg01no112_a10.g1)
ACCAG324547AG324548
length724727
length of high quality
(start - end)
276 (44 - 319)236 (76 - 311)
definitionCHROMAT_FILE: MSMg01no112_a10.b1 PHD_FILE: MSMg01no112_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:03 2005CHROMAT_FILE: MSMg01no112_a10.g1 PHD_FILE: MSMg01no112_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCACAAATCCGCGGA
ATTCATGATCTATTTCCTCATTGTTACTGTATACCTCTATATATTTATAT
GTACATACATACTTCTAAATATAACCTTTGAGTCCATATAATGTTACCTA
CCTGTATGTATGTTTTCAGGGATGACTGCTTGACACTATACAACTAATTG
GTGTGTGTTTCCCTATGGAGGACTACCTCTCTTTCCTGCTCCAGGTTTCA
TTCAGTGATAGCAATAATTTTATTTTGGAATGATTAATAGAAAAAAATCC
CAGCAAGAATGAAAATGACTACTGATGATAGCGGTATTAAAGGAAAAGGA
AAAAAAAAAGTAAAACAATGCTCATCACAGAAATTATTAGTACTTCTTCA
GTCAAAATAAGTGTTAGTCATAAATTCCAAAAATAATATAGTCCAATCCT
TCCCTGATTCTTTTATCTCCTCCTTCTTTCCTTTCTTCTGTCCCTCTCTT
GAGTTGGGCTCTTGCCTTGTACCTCAGGTTGAACCATAACAGCAACCCTA
GTATTGGGTCTGCGCCTATGCCTTGTTATGTACTGCTCCTACACAATGCA
GAAGATGATGCCCACACACCAAAAAAATGGTGGGCTTTCTGCTTTATTTG
GCGAATATAAGATGTACTGATTCACATTGGTTCCAAACAGTGCATATTAA
TTCCCACTATAAAAGATCCAGATA
CAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACTCATAAAAACAGCAATTTTGC
CAGACATCTGCCATTAAATAGTTTCTTATCACAGAGAGACAGATTTAGAA
GCTAATGGTGTTGGAAATGGCAAACGGCCAATTGTCACTTCTGGGGAACA
ATTTAGTTGGAAGAAATAAATATTGTAGTTCGATAATAAGAGCTAGCATT
TATCCTATAGTAGTATGTTGCATGCAGCAATCCTGGTAATATTTATTAAA
GAACCTTTCAAACTAGTATGTTGTTTCTTATCAGCTTCAAGTAAAGAAAC
TAAGGACTGGTTATATTAAATGACCAAACTAATCCAGGAAGTATTAAGGG
GTGCACTCAGTTCTTTCTGCTCCCAGATCAGCATCTAATTTGGGTCTCTA
GATTCTCTACCTCTCTGATGTCCAGTTACGAAAATGAGCGCTACCATTTA
CTACCGTAACAAATGTTCAGAACCCAAAGAGTCCTTTAGTGTGCTCTGTA
TATTACCAATCTGAAAACTCGCAGCCTTCTTGACTACCCAGGTAATGGAT
TCCACACCACTTCCTAATAGTGTTTTCCAGTCGTAATTTAGAAAACAAAG
GTTGCCCTTGCGTTTTAGAATCATGCTTCAAGAATCCAACCATACATGGC
ATCATTTTGTGCTTTACATACCCATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_a10.g1 MSMg01no112_a10.g1 CHROMAT_FILE:
MSMg01no112_a10.g1 PHD_FILE: MSMg01no112_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:03 2005
         (236 letters)



>mm_chrX_161834002_161834637
          Length = 636

 Score =  443 bits (229), Expect = e-129
 Identities = 232/233 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcactcataaaaacagcaattttgccagacatctgccattaaatagtttcttatcacaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcactcataaaaacagcaattttgccagacatctgccattaaatagtttcttatcacaga 260

                                                                       
Query: 61  gagacagatttagaagctaatggtgttggaaatggcaaacggccaattgtcacttctggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 261 gagacagatttagaagctaatggtgttggaaatggcaaacggccaattgtcacttctgga 320

                                                                       
Query: 121 gaacaatttagttggaagaaataaatattgtagttcgataataagagctagcatttatcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaacaatttagttggaagaaataaatattgtagttcgataataagagctagcatttatcc 380

                                                                
Query: 181 tatagtagtatgttgcatgcagcaatcctggtaatatttattaaagaaccttt 233
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatagtagtatgttgcatgcagcaatcctggtaatatttattaaagaaccttt 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)