BAC Information

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BAC

Clone NameMSMg01-113D09
ChromosomeX (Build37)
Map Location 62,443,343 - 62,443,658
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk4, LOC100040011, Ctag2
Downstream geneLOC671840
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113D09.T7 (MSMg01no113_d09.b1)MSMg01-113D09.TJ (MSMg01no113_d09.g1)
ACCAG325415AG325416
length713715
length of high quality
(start - end)
567 (42 - 608)544 (68 - 611)
definitionCHROMAT_FILE: MSMg01no113_d09.b1 PHD_FILE: MSMg01no113_d09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:34 2005CHROMAT_FILE: MSMg01no113_d09.g1 PHD_FILE: MSMg01no113_d09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTGTTTAGCTCTGAGCCCCATTTTTAATGGGGTTATTTGATTTTCTGG
AGTCCACCTTTTTGAGTTCTTTATATATATTGGGTATTAGTCCACTATCT
GATTTAGGATAGGTAAAGATAATTTCCCAATCTGTTGGTGGCCTTTTTGT
CTTATTGACAGTGTCTTTTGCCTTACAGAAGCTTTGAAGTTTCATGAAGT
CCCATTCGTCAATTCTCGATCTTACAGCAAAAGCCATTGCTGTTCTATTC
AGGAAATTTTCCCTTGTGCCCATATCTTCGAGGCTTTTCCCCACTTTCTC
CTCTATAAATTTCAGTGTCTCTGGTTTTATGTGGAGCTCCTTGGACCACT
TAGATTTGACCTTACCACAAGGAGATAGGAAAGGATAAATTCACATTCTT
CTACATGATAACAACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTC
TTTTTTCCACTGGATGCTTTTAGCTACCTTGTCGAAGATCAAGTGACCAT
AGGTGTGTGGGTTTTTTTCTGGGTCTTCAATTCTATTCCATTGGACTACT
TGTCTGTCTCTATAGCAGTATCAGGCAGGTTTTTATCATAACTGCTCTGC
AGAAAAGCTTTAGGTCAGGCATAGTGATTCTACCAGAGGTTCTTTTATCC
TTGAGCAGAGTTA
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTAAATTGATACAAGAAATCTCAAGTCCTTTAT
TGTATACAAGCTCAAAATAGAGCTCTTTAAACCTTGTGTGTCACAGGCTA
ATTGCACTAGGAAAAGAAAGAAGGCTTAGAAGCAGTTTAGGATCAAGGAA
AACATTCATTCCAGGTTAGGAATGAGGCCACGATCTGTTAACTAAAGGTC
ATCAATTGGGAATAGATAATTTATCATAGGTGCAAGGACAGAAAATAAAA
TAATGGACTAGTTTATCTGTATAAGACATCAAAATAAGACACAAGGCAGA
AGCTTTGTTTCTTGACAAAATTATGACATAAAAATTATTGCTTTCAACTT
ATAATGAAATTATTGATCTAGTCACAGATAATGAGTGTTTAGTCAGGTAA
TAGTCATAGCACAATGGCATATAGATAATTCTTTTGTAATTCCTTAAGTT
TTATTGATTCATGACATGAACCTTCCACTTACTATGAACTTCAGAATGTA
AATGTACTTAGAAAATCATGTGATCAATCATCCTGAGAAACTATAAATGA
TAAGTACAACAATAACGAGGCAAATTTAGCCCTTCTCTGCTTAATCTAGT
ATGTGTGTCTCAGGGAGTGCTTGAATTTTTTTCAGTCATTTCATTTCTTT
CCCTTTCTTTTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_d09.g1 MSMg01no113_d09.g1 CHROMAT_FILE:
MSMg01no113_d09.g1 PHD_FILE: MSMg01no113_d09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:35 2005
         (544 letters)



>mm_chrX_62442715_62443658
          Length = 944

 Score =  588 bits (304), Expect = e-172
 Identities = 313/316 (99%)
 Strand = Plus / Minus

                                                                       
Query: 229 taaaataatggactagtttatctgtataagacatcaaaataagacacaaggcagaagctt 288
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 944 taaaataatggactagtttatctgtataagacataaaaataagacacaaggcagaagctt 885

                                                                       
Query: 289 tgtttcttgacaaaattatgacataaaaattattgctttcaacttataatgaaattattg 348
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 tgtttcttgacaaaactatgacataaaaattattgctttcaacttataatgaaattattg 825

                                                                       
Query: 349 atctagtcacagataatgagtgtttagtcaggtaatagtcatagcacaatggcatataga 408
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 824 atctagtcacagataatgagtgtttagtcaggtaatagtcatagcagaatggcatataga 765

                                                                       
Query: 409 taattcttttgtaattccttaagttttattgattcatgacatgaaccttccacttactat 468
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 taattcttttgtaattccttaagttttattgattcatgacatgaaccttccacttactat 705

                                                                       
Query: 469 gaacttcagaatgtaaatgtacttagaaaatcatgtgatcaatcatcctgagaaactata 528
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 gaacttcagaatgtaaatgtacttagaaaatcatgtgatcaatcatcctgagaaactata 645

                           
Query: 529 aatgataagtacaaca 544
           ||||||||||||||||
Sbjct: 644 aatgataagtacaaca 629


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space:   498756
Effective search space used:   498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)