BAC Information

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BAC

Clone NameMSMg01-113N09
ChromosomeX (Build37)
Map Location 20,490,736 - 20,491,340
singlet/doubletsinglet
Overlap geneSyn1
Upstream geneChst7, Slc9a7, LOC668277, LOC100043954, EG668996, Rp2h, LOC668283, Phf16, Rgn, Ndufb11, Rbm10, Ube1x, Pctk1, Usp11, LOC100043955, Araf, Timp1
Downstream geneCfp, Elk1, Uxt, A230072C01Rik, Zfp182, Spaca5, D930016N04Rik, Ssxa1, Gm1848, EG546268, EG629024, EG331392, Agtr2, EG668997, Slc6a14, LOC100043180
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113N09.T7 (MSMg01no113_n09.b1)MSMg01-113N09.TJ (MSMg01no113_n09.g1)
ACCAG325870AG325871
length699696
length of high quality
(start - end)
643 (46 - 688)605 (64 - 668)
definitionCHROMAT_FILE: MSMg01no113_n09.b1 PHD_FILE: MSMg01no113_n09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:23 2005CHROMAT_FILE: MSMg01no113_n09.g1 PHD_FILE: MSMg01no113_n09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTCACCTCTGAGCCCCATTTTTTAATGGGGTTGTTTGATTT
TCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCC
TATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTC
TTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCAT
TAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTC
TGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACT
TTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCTTTGAT
CCATTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCA
TTCTTCTACATGATAACAACCAGTTGTGCCAGCACCATTTGTTGAAAATG
CTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTG
ACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGC
TTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTACCACAATTGCT
CTGTAGTAAAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTT
ATGAAGTGGGAGGCCTGGCGGCGCCTGTTTCAAACAGGGGGTGAACTATA
GAAGTTCCGAAAAATTCTAGGTTTCAACCCCGGCACTGGGGAGAAAAACA
GAACAAAACAACAGCAAATTGAAAGCAATGCTATATGCATTCTGGGGGAG
ATGGTAGAAAATGAAGCAACTCAGATTAAGAGAGGATACGAGGGCACGTC
CCTCATCATATCTCTACTGAATTACCAGTTGTGTCTCTGAGGAGACTGGG
CAGATCCAGAGAATTCTTGTAGACCACTGCAAATGTCACCAACCAGTACC
TCTGCTTGCAGTTTTTGTGCTAGACATGCTATTATTACAGATTAAGAAGG
TATCAAGTATGGCATGGAGCCAACAATTTGGCAAATTCGCTTCTTCAATT
CTGATTAGAAAAGAGGAACAAAAGCAGCTCATGTGGCACGGACAATATCT
GTCAATGGTTTTTCCCTATACAGCACTCTGCTGTTTCCTTCAACCTACAT
TATAATATCGTTCAGAGGAATCTGGAGCATCTGGACATCCCACAGAATAT
CACACTGGACCATTATATCAGTTCCATCACATGGATTATGTAAGATGAAA
AGAGATGGTTAGCATATTGCCTTGATAAGACACATGTGATCTGAGGTGGG
GATGGTAGCATAGCACTCAGAAGCCTAAGGCAGGAGGATCATGAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_n09.g1 MSMg01no113_n09.g1 CHROMAT_FILE:
MSMg01no113_n09.g1 PHD_FILE: MSMg01no113_n09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:23 2005
         (605 letters)



>mm_chrX_20490536_20491540
          Length = 1005

 Score = 1108 bits (573), Expect = 0.0
 Identities = 597/605 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctaggtttcaaccccggcactggggagaaaaacagaacaaaacaacagcaaattgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 attctaggtttcaaccccggcactggggagaaaaacagaacaaaacaacagtaaattgaa 260

                                                                       
Query: 61  agcaatgctatatgcattctgggggagatggtagaaaatgaagcaactcagattaagaga 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 agcaatgctatatgcattctgggggagatggtagaaaatgaagcaactaagattaagaga 320

                                                                       
Query: 121 ggatacgagggcacgtccctcatcatatctctactgaattaccagttgtgtctctgagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggatacgagggcacgtccctcatcatatctctactgaattaccagttgtgtctctgagga 380

                                                                       
Query: 181 gactgggcagatccagagaattcttgtagaccactgcaaatgtcaccaaccagtacctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gactgggcagatccagagaattcttgtagaccactgcaaatgtcaccaaccagtacctct 440

                                                                       
Query: 241 gcttgcagtttttgtgctagacatgctattattacagattaagaaggtatcaagtatggc 300
           |||||||| |   |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcttgcagctaccgtgctagacatgctattattacagattaagaaggtatcaagtatggc 500

                                                                       
Query: 301 atggagccaacaatttggcaaattcgcttcttcaattctgattagaaaagaggaacaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atggagccaacaatttggcaaattcgcttcttcaattctgattagaaaagaggaacaaaa 560

                                                                       
Query: 361 gcagctcatgtggcacggacaatatctgtcaatggtttttccctatacagcactctgctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcagctcatgtggcacggacaatatctgtcaatggtttttccctatacagcactctgctg 620

                                                                       
Query: 421 tttccttcaacctacattataatatcgttcagaggaatctggagcatctggacatcccac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttccttcaacctacattataatatcgttcagaggaatctggagcatctggacatcccac 680

                                                                       
Query: 481 agaatatcacactggaccattatatcagttccatcacatggattatgtaagatgaaaaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 681 agaatatcacactggaccattatatcagttccatcacatggattatgcaagatgaaaaga 740

                                                                       
Query: 541 gatggttagcatattgccttgataagacacatgtgatctgaggtggggatggtagcatag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 741 gatggttagcatattgccttgataagacacatgtgatctgaggtggggatggtagcacag 800

                
Query: 601 cactc 605
           |||||
Sbjct: 801 cactc 805


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space:   592025
Effective search space used:   592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)