BAC Information

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BAC

Clone NameMSMg01-114J08
ChromosomeX (Build37)
Map Location 43,784,020 - 43,784,569
singlet/doubletsinglet
Overlap genenone
Upstream geneEG385346, LOC100040075, Actrt1
Downstream geneEG245405, LOC665632
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114J08.T7 (MSMg01no114_j08.b1)MSMg01-114J08.TJ (MSMg01no114_j08.g1)
ACCAG326427AG326428
length718731
length of high quality
(start - end)
579 (44 - 622)396 (75 - 470)
definitionCHROMAT_FILE: MSMg01no114_j08.b1 PHD_FILE: MSMg01no114_j08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:18 2005CHROMAT_FILE: MSMg01no114_j08.g1 PHD_FILE: MSMg01no114_j08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTAAACCTAGGCTTGGGCTTGGAAAGGCTTTTGTGTATGCTCTGTTA
GTAAACTCTGTTTAATCTAACATTTAAGGGATCCAAGAACCAAATGATGG
TTGATCTGTTGTCCTCCGTGGCCCCCTTTCTAGGTATGAAACCAACCACT
TCAACAGCAGGTGGAGTGGTGAGGACTACTGGGTAGGGTTCCTTCCAGAC
AGATTTCAGGGTCTAGGCAGAAACTTTCTTTATCCAACCAAGTCCCATCA
AAGGAACTAGTGGTCAGGTTTTGAGGTGGTAGATTGCAGAATACCCTTCA
CAGTCTGGTCAGTGGCCTAGCAAGCTTCTTACAAAACCTGTAAGGACATG
AGAAGGTAATGATTAGACATTTCTGCCTGAAATATCTTGGAGTTTGGTGT
GGGGCAGTGGGCTGTGCATAGACAACCTGGTCCCTGGTATAGCAAAGGTC
TGGAACCCGCGTGACCCAGTGGGTGGTGATTTCCACCATCATGGGACAGA
AGGCATTCAGCCATGCTTCCTGGGTCAGTAGCTACAGCCTCCCACAACAT
CCTGCAGAGAAGTATGTGGGCATCAGTCACATAGAAGCAGCACAAAGCCC
TCATACATGCAAATAAGGATTCCCCCAAGCTCTCAGATCAAACCAATGAG
AAGTACCTGGTGTCAGAA
ATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCGAG
AAGCACCTGACAAAATGTTCAGCATCCTTAATCATCAGTAAAATGTAAAT
CAAAACAACCCAGAGATTCCATCTCACATCATTTAGAATGACTAAGATAA
AAAATTCAGGTGACAGCAGTTGCTGGCGAGGATGTGGAGAAAGAGGAATA
CTCCTTCATTGTTGGTGGGATTGCAAGCTTGTACAACAACTCTGGAAATC
AGTCTGGTGGTTCCTCAGAAAATTGGACATGGTACTACCAGAGGATCCTG
CAATACCTCTCCTGGGCATATATCCAGAAGTTGTTCCAATGAGTAAGAAA
GAAACATGCTCCACTATGCCCATAGCAGCCTTTTTTATAATAGCCAGAAG
CTGGAAAGCACCCAGATGCCCCTCACCAGAGGAATGGATAATAAAAATGT
GGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT
ATGAAATTCCTAGGCAAATGGTTGGACCTGCAGGGCATTATCATGAGCGA
GGTAACCCAATCACAACAGAACTCAAATGATACATACTCACTGAGAAGCG
GATATTAGCCCAGAAACTTAGAATATCCCAGATATAAGGTACAATTTTCC
AAACACATGACACTCCAGAAGAACGAATACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_j08.b1 MSMg01no114_j08.b1 CHROMAT_FILE:
MSMg01no114_j08.b1 PHD_FILE: MSMg01no114_j08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:18 2005
         (579 letters)



>mm_chrX_43783966_43784944
          Length = 979

 Score =  944 bits (488), Expect = 0.0
 Identities = 541/572 (94%), Gaps = 22/572 (3%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctaaacctaggcttgggcttggaaaggcttttgtgtatgctctgttagtaaact 64
           ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 604 gaattcctaaacctaggtttgagcttggaaaggcttttgtgtatgctctgttagtaaact 545

                                                                       
Query: 65  ctgtttaatctaacatttaagggatccaagaaccaaatgatggttgatctgttgtcctcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 544 ctgtttaatctaacatttaagggatccaagaaccaaatgatggttgatctgttgtcctct 485

                                                                       
Query: 125 gtggccccctttctaggtatgaaaccaaccacttcaacagcaggtggagtggtgaggact 184
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gtggccccttttctaggtatgaaaccaaccacttcaacagcaggtggagtggtgaggact 425

                                                                       
Query: 185 actgggtagggttccttccagacagatttcagggtctaggcagaaactttctttatccaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 actgggtagggttccttccagacagatttcagggtctaggcagaaactttctttatccaa 365

                                                                       
Query: 245 ccaagtcccatcaaaggaactagtggtcaggttttgaggtggtagattgcagaataccct 304
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ccaagtcccatcaaaggagctagtggtcaggttttgaggtggtagattgcagaataccct 305

                                                                       
Query: 305 tcacagtctggtcagtggcctagcaagcttcttacaaaacctgtaaggacatgagaaggt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tcacagtctggtcagtggcctagcaagcttcttacaaaacctgtaaggacatgagaaggt 245

                                                                       
Query: 365 aatgattagacatttctgcctgaaatatcttggagtttggtgtggggcagtgggctgtgc 424
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 244 aatgattagacatttctgcctgagatatcttggagtttggtgtggggcagtgggctgtgc 185

                                                                       
Query: 425 atagacaacctggtccctggtatagcaaaggtctggaacccgcgtgacccagtgggtggt 484
           ||||||||||||||||||||| ||||||||||||||||||||               |||
Sbjct: 184 atagacaacctggtccctggtgtagcaaaggtctggaacccg---------------ggt 140

                                                                       
Query: 485 gatttccaccatcatgggacagaaggcattcagccatgcttcctgggtcagtagctacag 544
           ||       ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 ga-------catcatgagacagaaggcattcagccatgcttcctgggtcagtagctacag 87

                                           
Query: 545 cctcccacaacatcctgcagagaagtatgtgg 576
           |||||| |||||||||||||||||||||||||
Sbjct: 86  cctcccccaacatcctgcagagaagtatgtgg 55


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space:   551361
Effective search space used:   551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)